Wall clock time and date at job start Mon Mar 30 2020 00:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47153 * 301.93621 * 3 2 1 5 5 C 1.36665 * 119.99714 * 262.39278 * 4 3 2 6 6 H 1.08001 * 119.99709 * 143.59584 * 5 4 3 7 7 C 1.39172 * 120.00299 * 323.60393 * 5 4 3 8 8 N 1.31278 * 119.99942 * 163.29669 * 7 5 4 9 9 Si 1.86799 * 119.99801 * 343.29271 * 7 5 4 10 10 H 1.48504 * 109.46904 * 89.23304 * 9 7 5 11 11 H 1.48502 * 109.47016 * 209.23040 * 9 7 5 12 12 H 1.48498 * 109.47437 * 329.23502 * 9 7 5 13 13 C 1.34769 * 119.99645 * 82.39741 * 4 3 2 14 14 O 1.21631 * 119.99475 * 183.73709 * 13 4 3 15 15 C 1.47564 * 120.00679 * 3.73631 * 13 4 3 16 16 N 1.32417 * 120.59553 * 354.30311 * 15 13 4 17 17 C 1.32702 * 121.17880 * 180.02562 * 16 15 13 18 18 C 1.35483 * 122.11426 * 359.97438 * 17 16 15 19 19 N 1.36291 * 120.54054 * 0.02562 * 18 17 16 20 20 C 1.36175 * 133.91705 * 180.32190 * 19 18 17 21 21 C 1.35333 * 107.13894 * 180.02562 * 20 19 18 22 22 N 1.33573 * 108.60281 * 359.63895 * 21 20 19 23 23 C 1.31827 * 109.14604 * 0.22090 * 22 21 20 24 24 H 1.08998 * 109.47026 * 181.93334 * 3 2 1 25 25 H 1.09004 * 109.46825 * 61.93612 * 3 2 1 26 26 H 0.97005 * 120.00280 * 179.97438 * 8 7 5 27 27 H 1.07994 * 118.94676 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.73136 * 180.02562 * 18 17 16 29 29 H 1.07998 * 126.43034 * 359.94211 * 20 19 18 30 30 H 1.08002 * 125.69855 * 179.90103 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7298 1.1722 5 6 3.4719 -0.0471 2.2951 6 1 3.2720 -0.4628 3.2717 7 6 4.1113 1.1837 2.1802 8 7 4.1794 1.9872 3.2162 9 14 4.8726 1.6922 0.5520 10 1 3.8591 2.4038 -0.2675 11 1 6.0259 2.5930 0.8048 12 1 5.3381 0.4843 -0.1756 13 6 3.1763 -2.0748 1.1430 14 8 3.5171 -2.6855 2.1381 15 6 2.8501 -2.8066 -0.0962 16 7 2.3708 -2.1657 -1.1511 17 6 2.0730 -2.8123 -2.2711 18 6 2.2416 -4.1507 -2.3965 19 7 2.7298 -4.8875 -1.3591 20 6 3.0077 -6.2096 -1.1880 21 6 3.4776 -6.3585 0.0724 22 7 3.4983 -5.1609 0.6637 23 6 3.0507 -4.2536 -0.1815 24 1 2.9708 1.0279 0.0347 25 1 2.9715 -0.4827 -0.9069 26 1 4.6254 2.8449 3.1363 27 1 1.6839 -2.2537 -3.1094 28 1 1.9869 -4.6378 -3.3262 29 1 2.8763 -6.9926 -1.9201 30 1 3.7884 -7.2894 0.5233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323120959.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:22 Heat of formation + Delta-G solvation = 125.094118 kcal Electronic energy + Delta-G solvation = -20225.431713 eV Core-core repulsion = 17023.924703 eV Total energy + Delta-G solvation = -3201.507010 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.99156 -41.05086 -39.21584 -37.87344 -36.50488 -35.36805 -34.18917 -31.61082 -30.59081 -29.41642 -27.87210 -25.70888 -24.28608 -23.12954 -21.56198 -20.38375 -19.60205 -18.97338 -18.36437 -17.62095 -17.23983 -16.86932 -16.53232 -16.08239 -15.77930 -15.35704 -15.05668 -14.70458 -14.67397 -14.45292 -14.15177 -14.03045 -13.84555 -13.51345 -13.17288 -12.79350 -12.55318 -12.23559 -11.77061 -11.25562 -11.13484 -11.03436 -10.51373 -10.08232 -9.94740 -9.18837 -8.55399 -6.23765 -0.99137 0.16817 1.21586 1.30525 1.36069 1.49294 1.50467 1.72916 1.81572 1.91665 2.17160 2.32559 2.56554 2.84046 2.97948 3.10583 3.27347 3.30333 3.76514 4.02452 4.07501 4.15699 4.38692 4.41427 4.55568 4.82486 5.15998 5.40580 5.49686 5.79117 5.94239 6.28458 6.47507 6.54226 6.73926 6.84991 7.04314 7.59428 8.60051 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.007082 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.855800 B = 3952.518287 C = 4438.063476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.240 3.760 3 C 0.167 3.833 4 N -0.440 5.440 5 C -0.342 4.342 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.894 5.894 9 Si 0.933 3.067 10 H -0.217 1.217 11 H -0.276 1.276 12 H -0.241 1.241 13 C 0.505 3.495 14 O -0.567 6.567 15 C 0.155 3.845 16 N -0.445 5.445 17 C 0.012 3.988 18 C 0.051 3.949 19 N -0.356 5.356 20 C -0.055 4.055 21 C 0.005 3.995 22 N -0.498 5.498 23 C 0.159 3.841 24 H 0.111 0.889 25 H 0.178 0.822 26 H 0.288 0.712 27 H 0.229 0.771 28 H 0.237 0.763 29 H 0.248 0.752 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 -11.503 -21.609 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.078 4.078 3 C 0.042 3.958 4 N -0.161 5.161 5 C -0.470 4.470 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.530 5.530 9 Si 0.754 3.246 10 H -0.142 1.142 11 H -0.202 1.202 12 H -0.164 1.164 13 C 0.294 3.706 14 O -0.447 6.447 15 C -0.007 4.007 16 N -0.162 5.162 17 C -0.128 4.128 18 C -0.073 4.073 19 N -0.030 5.030 20 C -0.188 4.188 21 C -0.146 4.146 22 N -0.219 5.219 23 C -0.088 4.088 24 H 0.128 0.872 25 H 0.194 0.806 26 H 0.098 0.902 27 H 0.246 0.754 28 H 0.253 0.747 29 H 0.264 0.736 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.288 -10.641 -20.332 23.062 hybrid contribution 0.635 -0.553 -0.117 0.850 sum -1.652 -11.195 -20.449 23.371 Atomic orbital electron populations 1.81001 1.13633 1.10576 1.09940 1.29647 0.95373 0.91305 0.91462 1.20415 0.81331 1.00504 0.93508 1.43384 1.54976 1.04178 1.13562 1.18770 1.39924 1.02880 0.85433 0.92750 1.26319 0.94975 0.94677 1.02860 1.69736 1.39641 1.09719 1.33877 0.86121 0.79612 0.80346 0.78546 1.14217 1.20214 1.16442 1.17883 0.82972 0.82586 0.87185 1.90743 1.50746 1.67368 1.35816 1.21843 0.98384 0.86288 0.94177 1.68346 1.09887 1.37860 1.00058 1.23052 1.01366 0.91650 0.96744 1.23660 0.97101 0.93157 0.93416 1.43265 1.39165 1.09275 1.11341 1.23607 1.09895 0.83417 1.01836 1.23581 1.01812 0.96591 0.92623 1.70589 1.19758 1.00708 1.30796 1.22262 1.06911 0.94421 0.85181 0.87247 0.80556 0.90194 0.75443 0.74714 0.73639 0.77031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.87 18.54 20.01 0.37 -19.50 16 2 C 0.24 9.67 14.37 89.44 1.29 10.95 16 3 C 0.17 6.53 3.98 84.57 0.34 6.87 16 4 N -0.44 -22.00 2.21 -649.05 -1.44 -23.44 16 5 C -0.34 -20.00 9.46 84.16 0.80 -19.21 16 6 H 0.05 3.75 7.85 -2.91 -0.02 3.72 16 7 C 0.02 0.89 5.37 85.00 0.46 1.35 16 8 N -0.89 -51.36 13.95 21.70 0.30 -51.06 16 9 Si 0.93 37.24 24.83 68.60 1.70 38.95 16 10 H -0.22 -7.12 6.47 99.48 0.64 -6.48 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.24 -9.11 7.11 99.48 0.71 -8.40 16 13 C 0.50 25.89 7.52 86.70 0.65 26.54 16 14 O -0.57 -34.28 16.08 -4.13 -0.07 -34.35 16 15 C 0.15 6.19 6.82 43.63 0.30 6.49 16 16 N -0.44 -13.49 5.19 -181.44 -0.94 -14.43 16 17 C 0.01 0.22 11.01 83.92 0.92 1.15 16 18 C 0.05 0.73 11.00 83.36 0.92 1.65 16 19 N -0.36 -8.31 2.95 -347.20 -1.02 -9.33 16 20 C -0.05 -0.96 11.80 83.35 0.98 0.03 16 21 C 0.01 0.13 11.84 83.76 0.99 1.12 16 22 N -0.50 -19.69 10.75 -189.58 -2.04 -21.72 16 23 C 0.16 5.87 7.66 135.62 1.04 6.91 16 24 H 0.11 4.14 2.92 -2.39 -0.01 4.13 16 25 H 0.18 5.66 5.22 -2.81 -0.01 5.65 16 26 H 0.29 14.91 8.31 -92.70 -0.77 14.14 16 27 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.24 0.28 8.06 -2.91 -0.02 0.26 16 29 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 30 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -88.32 272.53 6.70 -81.62 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.15 Total: 9.40 kcal Atomic # 6 Polarization: 35.18 SS G_CDS: 8.68 Total: 43.86 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -4.77 Total: -139.48 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.07 Total: -34.35 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 1.70 Total: 38.95 kcal Total: -88.32 6.70 -81.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323120959.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.719 kcal (2) G-P(sol) polarization free energy of solvation -88.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds