Wall clock time and date at job start Mon Mar 30 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15074 * 2 1 4 4 C 1.39771 * 126.56590 * 0.02562 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.74176 * 3 2 1 13 13 N 1.28514 * 109.74899 * 0.26251 * 12 3 2 14 14 C 1.32387 * 110.20378 * 0.02562 * 13 12 3 15 15 S 1.76196 * 126.26075 * 179.97438 * 14 13 12 16 16 C 1.81001 * 100.00091 * 0.02562 * 15 14 13 17 17 C 1.52995 * 109.47464 * 180.02562 * 16 15 14 18 18 O 1.43752 * 109.63260 * 58.90625 * 17 16 15 19 19 C 1.44590 * 104.92215 * 215.71336 * 18 17 16 20 20 C 1.54912 * 101.63274 * 36.26456 * 19 18 17 21 21 O 1.43367 * 109.63299 * 299.69366 * 17 16 15 22 22 H 1.09002 * 109.47190 * 89.99644 * 1 2 3 23 23 H 1.09008 * 109.47074 * 209.99766 * 1 2 3 24 24 H 1.08997 * 109.46970 * 329.99436 * 1 2 3 25 25 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 26 26 H 1.09000 * 109.47093 * 300.00270 * 16 15 14 27 27 H 1.08999 * 109.47401 * 59.99677 * 16 15 14 28 28 H 1.08997 * 109.63430 * 179.29743 * 17 16 15 29 29 H 1.09005 * 111.08176 * 278.15790 * 19 18 17 30 30 H 1.08992 * 110.98014 * 154.33288 * 19 18 17 31 31 H 1.09000 * 110.69410 * 205.96099 * 20 19 18 32 32 H 1.09004 * 110.83986 * 82.83395 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8680 2.7029 0.1297 6 6 2.8656 3.4537 -0.1664 7 7 2.5435 4.7028 0.0512 8 14 4.6015 3.0159 -0.6996 9 1 5.4391 2.7636 0.5004 10 1 4.5667 1.7952 -1.5446 11 1 5.1786 4.1407 -1.4786 12 7 3.5489 0.6414 0.0057 13 7 3.5370 -0.6437 0.0037 14 6 2.2904 -1.0894 -0.0041 15 16 1.7873 -2.7780 -0.0102 16 6 3.4059 -3.5882 -0.0021 17 6 3.2163 -5.1063 -0.0067 18 8 2.4698 -5.4963 -1.1716 19 6 1.6418 -6.5971 -0.7319 20 6 1.2841 -6.1619 0.7112 21 8 2.4858 -5.5041 1.1609 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6247 4.9385 0.2540 26 1 3.9660 -3.2896 -0.8882 27 1 3.9556 -3.2930 0.8916 28 1 4.1896 -5.5969 -0.0145 29 1 2.2016 -7.5324 -0.7300 30 1 0.7462 -6.6819 -1.3473 31 1 1.0649 -7.0305 1.3323 32 1 0.4428 -5.4689 0.7099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326862507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:10 Heat of formation + Delta-G solvation = -24.886733 kcal Electronic energy + Delta-G solvation = -18480.708136 eV Core-core repulsion = 15375.848668 eV Total energy + Delta-G solvation = -3104.859468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89193 -40.47500 -35.16972 -33.90994 -33.55705 -31.95639 -29.97683 -28.40794 -26.70789 -25.31440 -23.53133 -22.62495 -21.36285 -20.14031 -18.17553 -17.72925 -17.17507 -16.40744 -16.07431 -15.25536 -15.00913 -14.66563 -14.17139 -13.81359 -13.50446 -13.38347 -13.16523 -12.90470 -12.69758 -12.52013 -12.38851 -11.91770 -11.72731 -11.08503 -10.85541 -10.49026 -10.26621 -9.91019 -9.87842 -9.58629 -9.35891 -8.99125 -8.62149 -8.37186 -7.41546 -6.98503 -4.79821 1.86619 2.65990 2.93952 3.21317 3.54304 3.62212 3.77151 3.92423 4.04174 4.13041 4.34398 4.39813 4.61247 4.75823 4.96528 5.12058 5.12968 5.17234 5.39785 5.42905 5.48109 5.66090 5.74610 5.91826 5.93179 6.42328 6.68505 6.83407 7.15979 7.42224 7.56963 8.07076 8.38578 8.58664 9.97996 10.15129 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040932 B = 0.004809 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.904017 B = 5821.208068 C = 6265.990484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.343 3.657 4 C -0.495 4.495 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.809 5.809 8 Si 1.105 2.895 9 H -0.277 1.277 10 H -0.256 1.256 11 H -0.311 1.311 12 N -0.411 5.411 13 N -0.274 5.274 14 C 0.064 3.936 15 S -0.021 6.021 16 C -0.113 4.113 17 C 0.248 3.752 18 O -0.367 6.367 19 C 0.016 3.984 20 C 0.019 3.981 21 O -0.376 6.376 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.283 0.717 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -19.064 -0.594 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.213 5.213 3 C 0.100 3.900 4 C -0.536 4.536 5 H 0.100 0.900 6 C -0.156 4.156 7 N -0.433 5.433 8 Si 0.933 3.067 9 H -0.203 1.203 10 H -0.181 1.181 11 H -0.241 1.241 12 N -0.260 5.260 13 N -0.118 5.118 14 C -0.310 4.310 15 S 0.205 5.795 16 C -0.262 4.262 17 C 0.151 3.849 18 O -0.287 6.287 19 C -0.061 4.061 20 C -0.057 4.057 21 O -0.297 6.297 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.950 -18.758 -0.834 19.007 hybrid contribution -2.152 0.071 0.442 2.198 sum -5.102 -18.687 -0.392 19.375 Atomic orbital electron populations 1.21528 0.77862 1.02851 1.01984 1.45860 1.06384 1.04953 1.64103 1.21672 0.85105 0.89016 0.94244 1.19355 0.97864 0.87273 1.49105 0.89953 1.27296 1.07345 0.91360 0.89609 1.70658 1.22382 1.19089 1.31131 0.82905 0.71184 0.73750 0.78903 1.20303 1.18070 1.24052 1.74192 1.16030 1.00895 1.34920 1.74252 1.15485 1.05673 1.16417 1.25561 0.90895 0.93517 1.21028 1.84518 1.09729 0.90036 1.95238 1.23955 0.99624 0.94581 1.08038 1.23852 0.93593 0.92496 0.74920 1.89303 1.57598 1.50057 1.31792 1.24361 0.95849 0.90754 0.95087 1.24226 0.88987 0.97714 0.94801 1.88950 1.34109 1.77489 1.29128 0.92147 0.91259 0.90313 0.90536 0.87409 0.87213 0.87977 0.90662 0.87236 0.88273 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.89 59.85 0.65 2.52 16 2 N -0.51 -12.21 3.26 -123.18 -0.40 -12.61 16 3 C 0.34 9.37 7.21 -154.82 -1.12 8.25 16 4 C -0.50 -13.52 9.47 -38.32 -0.36 -13.89 16 5 H 0.08 2.18 7.46 -52.48 -0.39 1.79 16 6 C 0.07 1.82 5.52 -17.29 -0.10 1.73 16 7 N -0.81 -22.00 13.65 55.56 0.76 -21.24 16 8 Si 1.10 28.08 26.40 -169.99 -4.49 23.59 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.26 -6.78 6.25 56.52 0.35 -6.42 16 11 H -0.31 -7.53 7.11 56.52 0.40 -7.13 16 12 N -0.41 -11.66 7.50 31.26 0.23 -11.43 16 13 N -0.27 -7.23 11.62 30.89 0.36 -6.87 16 14 C 0.06 1.49 8.09 -87.28 -0.71 0.79 16 15 S -0.02 -0.37 21.04 -107.50 -2.26 -2.63 16 16 C -0.11 -1.77 5.41 37.15 0.20 -1.56 16 17 C 0.25 3.10 4.23 37.15 0.16 3.26 16 18 O -0.37 -4.57 10.90 -59.05 -0.64 -5.22 16 19 C 0.02 0.13 7.95 38.17 0.30 0.44 16 20 C 0.02 0.17 8.05 38.17 0.31 0.48 16 21 O -0.38 -4.74 10.82 -59.05 -0.64 -5.38 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.07 1.09 7.85 -51.92 -0.41 0.69 16 24 H 0.08 1.38 7.47 -51.93 -0.39 1.00 16 25 H 0.28 7.32 8.73 -40.82 -0.36 6.97 16 26 H 0.11 1.76 8.14 -51.92 -0.42 1.34 16 27 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -33.29 289.12 -7.15 -40.44 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -3.77 Total: -5.03 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.66 Total: 2.01 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.95 Total: -52.15 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.28 Total: -10.59 kcal Atomic # 14 Polarization: 28.08 SS G_CDS: -4.49 Total: 23.59 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.63 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.29 -7.15 -40.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326862507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.555 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds