Wall clock time and date at job start Mon Mar 30 2020 01:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 N 1.39928 * 125.74644 * 60.02314 * 4 2 1 6 6 C 1.30415 * 108.95724 * 179.97438 * 5 4 2 7 7 C 1.41338 * 108.05025 * 0.02562 * 6 5 4 8 8 C 1.47295 * 126.43799 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00142 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99547 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99462 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46889 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00261 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00342 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00057 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47312 * 89.99467 * 16 14 12 18 18 H 1.48497 * 109.47199 * 209.99971 * 16 14 12 19 19 H 1.48507 * 109.47005 * 329.99860 * 16 14 12 20 20 C 1.34344 * 125.74935 * 239.71741 * 4 2 1 21 21 Cl 1.73598 * 126.32184 * 0.03749 * 20 4 2 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08002 * 125.97091 * 179.97438 * 6 5 4 30 30 H 0.97000 * 120.00264 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.47477 * 299.99310 * 11 10 8 32 32 H 1.08994 * 109.47432 * 60.00306 * 11 10 8 33 33 H 0.96994 * 120.00687 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7560 -0.3187 -2.5193 6 6 2.3501 -1.1583 -3.3211 7 6 3.0259 -2.1153 -2.5306 8 6 3.8270 -3.2488 -3.0236 9 8 4.3612 -4.0047 -2.2347 10 7 3.9679 -3.4484 -4.3491 11 6 4.7651 -4.5754 -4.8394 12 6 4.7631 -4.5741 -6.3464 13 1 4.2225 -3.8099 -6.8851 14 6 5.4524 -5.5479 -7.0376 15 7 5.4511 -5.5465 -8.3527 16 14 6.3881 -6.8693 -6.1061 17 1 5.4933 -8.0284 -5.8588 18 1 7.5566 -7.3086 -6.9103 19 1 6.8582 -6.3213 -4.8083 20 6 2.7984 -1.7844 -1.2074 21 17 3.4047 -2.6293 0.1826 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 2.3287 -1.1279 -4.4005 30 1 3.5415 -2.8457 -4.9784 31 1 5.7888 -4.4813 -4.4771 32 1 4.3356 -5.5093 -4.4768 33 1 5.9357 -6.2317 -8.8390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329041940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:27 Heat of formation + Delta-G solvation = 3.899652 kcal Electronic energy + Delta-G solvation = -18161.928907 eV Core-core repulsion = 15056.274004 eV Total energy + Delta-G solvation = -3105.654903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.58898 -40.09071 -38.03637 -36.72089 -36.08802 -34.35715 -31.83990 -31.44639 -29.54126 -28.25913 -25.08348 -24.05172 -23.13122 -21.55624 -20.97711 -19.33975 -18.53359 -17.45484 -16.90347 -16.83040 -16.09063 -15.85555 -15.82883 -15.33794 -14.81147 -14.51387 -14.27681 -14.20687 -13.84615 -13.37617 -13.27140 -13.04190 -13.03957 -12.99021 -12.66908 -12.41504 -12.10466 -11.91205 -11.85329 -11.60464 -10.87628 -10.85145 -10.55875 -10.05907 -9.67237 -8.35542 -6.41902 0.14310 0.19300 1.02271 1.36526 1.38364 1.41662 1.51608 2.32240 2.41492 2.51375 3.00347 3.23659 3.73920 3.83821 3.85054 3.97845 4.05355 4.44732 4.61974 4.65511 4.74843 4.76181 4.87437 5.07296 5.09538 5.18819 5.27725 5.31574 5.52903 5.56478 6.13376 6.26155 6.58976 6.89585 7.20227 7.44287 8.79110 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.004285 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.928326 B = 6532.555784 C = 7138.414137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.338 5.338 5 N -0.276 5.276 6 C 0.095 3.905 7 C -0.286 4.286 8 C 0.578 3.422 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.235 3.765 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.027 3.973 15 N -0.932 5.932 16 Si 0.935 3.065 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.259 1.259 20 C 0.175 3.825 21 Cl 0.028 6.972 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.407 0.593 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 13.786 19.171 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.121 5.121 5 N -0.097 5.097 6 C -0.092 4.092 7 C -0.302 4.302 8 C 0.365 3.635 9 O -0.466 6.466 10 N -0.347 5.347 11 C 0.111 3.889 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.173 4.173 15 N -0.571 5.571 16 Si 0.759 3.241 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.183 1.183 20 C 0.015 3.985 21 Cl 0.056 6.944 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.128 0.872 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.239 0.761 30 H 0.243 0.757 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.031 14.210 19.879 26.414 hybrid contribution 0.979 -1.403 -0.390 1.755 sum -9.051 12.806 19.489 25.015 Atomic orbital electron populations 1.22124 0.91158 1.03094 1.04871 1.22036 0.97351 0.95035 0.82262 1.22128 1.01439 0.92830 1.04872 1.49272 1.36152 1.19254 1.07463 1.77219 1.23906 1.22911 0.85639 1.24435 0.93038 0.90158 1.01562 1.19907 1.14333 1.04427 0.91577 1.17510 0.79871 0.83672 0.82421 1.90727 1.50941 1.48716 1.56238 1.45733 1.52073 1.30973 1.05950 1.19106 0.90795 0.85666 0.93297 1.21298 1.33096 1.13935 0.89888 0.92017 1.25568 0.96622 0.99630 0.95492 1.69976 1.43488 1.36001 1.07619 0.85886 0.79054 0.79795 0.79351 1.19049 1.19975 1.18316 1.22115 0.95448 0.90200 0.90757 1.98435 1.84754 1.73953 1.37252 0.92734 0.91593 0.87208 0.86543 0.87214 0.92742 0.91592 0.76072 0.75670 0.96739 0.96861 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.45 71.98 0.68 -1.16 16 2 C 0.13 1.97 3.66 44.99 0.16 2.14 16 3 C -0.16 -1.84 9.45 71.98 0.68 -1.16 16 4 N -0.34 -7.85 3.25 -315.63 -1.03 -8.87 16 5 N -0.28 -6.89 12.33 -56.26 -0.69 -7.58 16 6 C 0.09 2.46 11.50 85.67 0.99 3.44 16 7 C -0.29 -9.16 6.13 -20.12 -0.12 -9.28 16 8 C 0.58 23.15 7.81 86.62 0.68 23.82 16 9 O -0.58 -27.01 15.64 -4.09 -0.06 -27.08 16 10 N -0.70 -28.77 5.54 -470.24 -2.61 -31.38 16 11 C 0.23 11.62 4.50 85.63 0.38 12.01 16 12 C -0.54 -30.05 9.83 25.60 0.25 -29.80 16 13 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 14 C 0.03 1.53 5.47 84.66 0.46 1.99 16 15 N -0.93 -55.74 13.96 21.45 0.30 -55.44 16 16 Si 0.94 44.23 27.47 68.60 1.88 46.12 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 20 C 0.17 4.96 7.53 84.32 0.63 5.59 16 21 Cl 0.03 0.74 27.00 -2.72 -0.07 0.67 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.12 1.46 7.23 -2.39 -0.02 1.44 16 26 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.22 4.41 7.50 -2.91 -0.02 4.39 16 30 H 0.41 14.49 7.27 -92.71 -0.67 13.82 16 31 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 32 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -70.11 303.03 2.92 -67.18 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.41 Total: 8.78 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 4.80 Total: 7.60 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.03 Total: -103.27 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -0.07 Total: 0.67 kcal Total: -70.11 2.92 -67.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329041940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.082 kcal (2) G-P(sol) polarization free energy of solvation -70.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds