Wall clock time and date at job start Mon Mar 30 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46865 * 239.99722 * 3 2 1 5 5 H 1.48501 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47319 * 119.99681 * 3 2 1 7 7 C 1.37875 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00033 * 173.82494 * 7 2 1 9 9 C 1.50702 * 119.99805 * 353.83291 * 7 2 1 10 10 C 1.52994 * 115.55613 * 84.90142 * 9 7 2 11 11 S 1.81009 * 109.46861 * 39.92416 * 10 9 7 12 12 C 1.76205 * 99.99838 * 180.02562 * 11 10 9 13 13 S 1.71191 * 120.00145 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99602 * 179.97438 * 12 11 10 15 15 C 1.47020 * 125.64694 * 359.69666 * 14 12 11 16 16 C 1.54319 * 107.27180 * 180.96615 * 15 14 12 17 17 C 1.55153 * 102.86351 * 22.52777 * 16 15 14 18 18 C 1.47423 * 125.64575 * 180.02562 * 14 12 11 19 19 C 1.53001 * 117.51400 * 230.60316 * 9 7 2 20 20 C 1.52998 * 60.00070 * 107.48120 * 19 9 7 21 21 H 0.96993 * 119.99722 * 354.96151 * 1 2 3 22 22 H 1.09001 * 109.47361 * 279.92681 * 10 9 7 23 23 H 1.08998 * 109.47570 * 159.92314 * 10 9 7 24 24 H 1.08997 * 109.88157 * 300.50584 * 15 14 12 25 25 H 1.08995 * 109.88247 * 61.68095 * 15 14 12 26 26 H 1.08997 * 110.92414 * 264.10956 * 16 15 14 27 27 H 1.08997 * 110.59166 * 140.78837 * 16 15 14 28 28 H 1.09002 * 111.00331 * 206.23397 * 17 16 15 29 29 H 1.08991 * 111.01026 * 82.38031 * 17 16 15 30 30 H 1.08996 * 110.36797 * 274.68005 * 18 14 12 31 31 H 1.09000 * 110.36790 * 36.89295 * 18 14 12 32 32 H 1.09007 * 117.49740 * 214.96807 * 19 9 7 33 33 H 1.08997 * 117.49990 * 359.97438 * 19 9 7 34 34 H 1.09003 * 117.50012 * 252.51201 * 20 19 9 35 35 H 1.09002 * 117.52307 * 107.48333 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0799 -1.1968 -0.1001 9 6 1.2577 -2.4953 0.1413 10 6 0.6967 -3.0781 -1.1573 11 16 1.8981 -2.8461 -2.4912 12 6 1.0188 -3.5860 -3.8269 13 16 -0.5382 -4.2476 -3.5647 14 7 1.5717 -3.6301 -5.0553 15 6 2.8919 -3.0958 -5.4204 16 6 3.0879 -3.3508 -6.9297 17 6 1.6326 -3.4974 -7.4471 18 6 0.9500 -4.2160 -6.2568 19 6 1.7486 -3.4807 1.2038 20 6 0.4454 -2.7088 1.4203 21 1 -0.4849 0.8368 0.0738 22 1 -0.2326 -2.5688 -1.4126 23 1 0.5029 -4.1424 -1.0240 24 1 2.9284 -2.0259 -5.2155 25 1 3.6691 -3.6104 -4.8555 26 1 3.6519 -4.2679 -7.0996 27 1 3.5810 -2.5007 -7.4012 28 1 1.5978 -4.1121 -8.3466 29 1 1.1809 -2.5216 -7.6251 30 1 1.1432 -5.2878 -6.2996 31 1 -0.1230 -4.0242 -6.2606 32 1 1.6719 -4.5443 0.9776 33 1 2.6122 -3.1881 1.8009 34 1 0.4516 -1.9082 2.1599 35 1 -0.4888 -3.2641 1.3364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329493381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:52 Heat of formation + Delta-G solvation = 21.989144 kcal Electronic energy + Delta-G solvation = -16475.255100 eV Core-core repulsion = 13918.721537 eV Total energy + Delta-G solvation = -2556.533563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42538 -38.46251 -34.24395 -34.01761 -30.37820 -29.74218 -27.73280 -26.94702 -22.93908 -22.67481 -22.53007 -21.08796 -18.90336 -18.53351 -17.85106 -17.32256 -16.60489 -15.84661 -15.59137 -15.19827 -14.71521 -14.59240 -14.38328 -14.30151 -13.83348 -13.37199 -13.09719 -12.90237 -12.77535 -12.40988 -12.35542 -12.34585 -12.18599 -11.96361 -11.71195 -11.65392 -11.31496 -10.75296 -10.48746 -9.95768 -9.31175 -8.94734 -8.78179 -8.10862 -6.24339 -0.41386 0.06980 0.80110 1.32200 1.44861 1.45813 1.52619 1.85744 2.43653 3.18585 3.43094 3.44011 3.51556 3.91845 4.10377 4.21519 4.28021 4.38842 4.46134 4.66877 4.70718 4.70960 4.78608 4.83343 4.99885 5.01843 5.03093 5.13797 5.23834 5.25020 5.46687 5.54727 5.62102 5.75504 6.32238 6.81326 7.44982 8.96723 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.006245 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.102972 B = 4482.578012 C = 5210.557517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.035 3.965 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.019 3.981 10 C -0.033 4.033 11 S 0.050 5.950 12 C 0.311 3.689 13 S -0.714 6.714 14 N -0.509 5.509 15 C 0.060 3.940 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.083 3.917 19 C -0.179 4.179 20 C -0.152 4.152 21 H 0.260 0.740 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.737 -5.333 -14.401 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.183 4.183 11 S 0.287 5.713 12 C -0.060 4.060 13 S -0.585 6.585 14 N -0.208 5.208 15 C -0.064 4.064 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.041 4.041 19 C -0.216 4.216 20 C -0.192 4.192 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.782 -5.113 -14.429 18.167 hybrid contribution -0.893 0.712 0.394 1.208 sum 8.889 -4.401 -14.035 17.186 Atomic orbital electron populations 1.70142 1.07301 1.27651 1.48544 1.25631 0.95282 1.01843 0.93924 0.85860 0.78646 0.79559 0.79215 1.19020 1.21598 1.19465 1.20526 0.92817 0.89417 1.51471 0.91874 1.18709 0.99721 0.94754 0.85189 1.23425 0.97986 1.01984 0.94867 1.85672 1.23435 1.63058 0.99132 1.27860 0.97390 0.88388 0.92359 1.93196 1.10482 1.63763 1.91099 1.48066 1.18332 1.48703 1.05678 1.23055 0.82326 1.00812 1.00242 1.22712 0.97228 1.05539 0.89764 1.22860 0.94824 1.01783 0.96536 1.23045 0.99586 0.99306 0.82171 1.23121 0.97573 0.96311 1.04625 1.22458 0.93673 1.01387 1.01649 0.93064 0.91328 0.90584 0.89514 0.88483 0.87948 0.86890 0.85898 0.90399 0.88625 0.90471 0.89242 0.89281 0.91383 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.82 12.93 21.45 0.28 -50.54 16 2 C 0.04 1.86 5.39 84.65 0.46 2.32 16 3 Si 0.94 41.48 29.55 68.60 2.03 43.51 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.50 -25.73 7.54 25.60 0.19 -25.53 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 9 C 0.02 0.89 1.64 -52.93 -0.09 0.80 16 10 C -0.03 -1.55 4.54 71.98 0.33 -1.22 16 11 S 0.05 2.00 20.16 -56.46 -1.14 0.86 16 12 C 0.31 11.83 7.48 129.79 0.97 12.80 16 13 S -0.71 -33.02 27.12 -56.46 -1.53 -34.55 16 14 N -0.51 -14.13 3.33 -694.40 -2.31 -16.44 16 15 C 0.06 1.12 6.37 86.73 0.55 1.67 16 16 C -0.11 -1.12 6.95 31.78 0.22 -0.90 16 17 C -0.12 -1.45 7.08 31.98 0.23 -1.22 16 18 C 0.08 1.79 6.62 86.85 0.57 2.37 16 19 C -0.18 -7.42 9.88 30.59 0.30 -7.12 16 20 C -0.15 -7.10 9.47 30.59 0.29 -6.81 16 21 H 0.26 14.23 8.32 -92.71 -0.77 13.45 16 22 H 0.07 3.75 7.72 -2.39 -0.02 3.73 16 23 H 0.08 3.51 7.53 -2.40 -0.02 3.49 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.10 7.50 -2.39 -0.02 2.08 16 32 H 0.09 3.32 8.08 -2.38 -0.02 3.30 16 33 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -68.39 315.75 2.41 -65.98 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.06 Total: 14.03 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.03 Total: -22.85 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -2.03 Total: -66.98 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -31.02 SS G_CDS: -2.67 Total: -33.69 kcal Total: -68.39 2.41 -65.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329493381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.971 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds