Wall clock time and date at job start Mon Mar 30 2020 01:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47133 * 2 1 4 4 N 1.46504 * 109.46912 * 120.00359 * 2 1 3 5 5 N 1.28940 * 126.47305 * 299.95215 * 4 2 1 6 6 N 1.28575 * 109.62377 * 179.76439 * 5 4 2 7 7 C 1.33365 * 109.89264 * 0.45725 * 6 5 4 8 8 N 1.39896 * 126.25454 * 179.82209 * 7 6 5 9 9 C 1.34773 * 119.99990 * 359.67875 * 8 7 6 10 10 O 1.21293 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50695 * 120.00373 * 179.72987 * 9 8 7 12 12 S 1.80997 * 109.47478 * 180.27780 * 11 9 8 13 13 C 1.76202 * 100.00066 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99989 * 179.97438 * 13 12 11 16 16 N 1.31633 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47272 * 59.99856 * 17 15 13 19 19 H 1.48496 * 109.47037 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46920 * 299.99977 * 17 15 13 21 21 N 1.31658 * 107.49088 * 359.55036 * 7 6 5 22 22 H 1.08998 * 109.46846 * 299.99954 * 1 2 3 23 23 H 1.09000 * 109.46780 * 60.00184 * 1 2 3 24 24 H 1.09007 * 109.46910 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46920 * 239.99903 * 2 1 3 26 26 H 1.09008 * 109.47073 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47402 * 300.00078 * 3 2 1 28 28 H 1.08998 * 109.47217 * 60.00273 * 3 2 1 29 29 H 0.97000 * 120.00486 * 179.69023 * 8 7 6 30 30 H 1.09009 * 109.47187 * 300.27655 * 11 9 8 31 31 H 1.08998 * 109.47423 * 60.27743 * 11 9 8 32 32 H 0.96999 * 119.99741 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7857 -0.3604 2.4206 6 7 2.3672 -1.1920 3.2102 7 6 3.0231 -2.1101 2.4991 8 7 3.7746 -3.1726 3.0124 9 6 3.8900 -3.3342 4.3454 10 8 3.3419 -2.5589 5.1001 11 6 4.6945 -4.4822 4.8984 12 16 4.6526 -4.4324 6.7072 13 6 5.6417 -5.8435 7.0751 14 1 6.0597 -6.4339 6.2733 15 6 5.8844 -6.1956 8.3956 16 7 5.3761 -5.4751 9.3730 17 14 6.9336 -7.6911 8.7857 18 1 8.2894 -7.5090 8.2079 19 1 7.0408 -7.8500 10.2582 20 1 6.3050 -8.9028 8.2010 21 7 2.8291 -1.8372 1.2258 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 4.2128 -3.7928 2.4089 30 1 4.2699 -5.4242 4.5509 31 1 5.7263 -4.4008 4.5565 32 1 5.5455 -5.7215 10.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332229979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:31 Heat of formation + Delta-G solvation = 74.308695 kcal Electronic energy + Delta-G solvation = -17625.262246 eV Core-core repulsion = 14556.996966 eV Total energy + Delta-G solvation = -3068.265280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.28279 -40.93811 -37.58635 -36.15196 -34.56549 -33.53454 -32.48148 -30.62217 -28.30767 -27.66536 -26.02148 -24.40125 -22.90864 -21.19874 -19.91947 -18.99552 -18.18958 -17.97733 -17.76442 -16.85781 -16.56703 -16.10839 -15.48938 -15.16513 -14.96697 -14.57483 -14.52234 -13.84167 -13.59683 -13.27253 -13.24788 -13.15714 -12.85976 -12.78595 -12.63911 -12.42225 -12.13616 -11.91273 -11.76586 -11.54290 -11.20091 -11.10780 -10.32073 -10.28191 -8.66728 -8.32772 -6.11506 -0.17244 0.45038 0.85367 1.21913 1.43689 1.46625 1.55351 1.71913 1.79304 2.27853 3.01072 3.01896 3.11768 3.42433 3.74739 3.77991 3.93896 4.00237 4.26696 4.28829 4.47991 4.50121 4.62812 4.73974 4.80361 5.02287 5.17201 5.20348 5.31020 5.44738 5.95529 6.22005 6.83402 7.08693 7.23168 8.76132 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.073059 B = 0.003096 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.160041 B = 9041.032977 C = 9233.109067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 C -0.162 4.162 4 N -0.178 5.178 5 N 0.000 5.000 6 N -0.338 5.338 7 C 0.413 3.587 8 N -0.606 5.606 9 C 0.536 3.464 10 O -0.502 6.502 11 C -0.121 4.121 12 S -0.146 6.146 13 C -0.545 4.545 14 H 0.089 0.911 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.261 1.261 21 N -0.327 5.327 22 H 0.063 0.937 23 H 0.126 0.874 24 H 0.057 0.943 25 H 0.144 0.856 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.446 0.554 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 8.183 -24.972 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.096 5.096 5 N 0.006 4.994 6 N -0.216 5.216 7 C 0.041 3.959 8 N -0.265 5.265 9 C 0.322 3.678 10 O -0.371 6.371 11 C -0.272 4.272 12 S 0.081 5.919 13 C -0.693 4.693 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.549 5.549 17 Si 0.821 3.179 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.186 1.186 21 N -0.178 5.178 22 H 0.082 0.918 23 H 0.145 0.855 24 H 0.076 0.924 25 H 0.162 0.838 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.288 0.712 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.975 9.946 -23.525 26.476 hybrid contribution 1.598 -2.261 -0.424 2.801 sum -5.377 7.684 -23.949 25.720 Atomic orbital electron populations 1.22279 0.90360 1.03640 1.05723 1.22464 0.97007 0.94148 0.81738 1.22276 1.01885 0.92113 1.05726 1.54200 1.31211 1.16741 1.07399 1.78357 1.13884 1.17703 0.89492 1.75741 1.14793 1.04827 1.26245 1.21821 0.94691 0.91921 0.87442 1.42580 1.49939 1.26228 1.07777 1.20634 0.80418 0.86106 0.80658 1.90854 1.44412 1.44336 1.57477 1.23316 1.03759 0.98891 1.01198 1.85754 1.68921 1.39829 0.97368 1.23187 1.36626 1.13718 0.95752 0.89296 1.26140 0.97254 1.00876 0.94946 1.70182 1.44197 1.40300 1.00191 0.84990 0.78447 0.77315 0.77164 1.18583 1.20707 1.18569 1.78739 1.18491 1.05387 1.15139 0.91808 0.85526 0.92382 0.83795 0.92378 0.85521 0.91812 0.71184 0.85546 0.85550 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.41 71.98 0.68 -0.71 16 2 C 0.14 1.67 3.97 44.99 0.18 1.85 16 3 C -0.16 -1.38 9.41 71.98 0.68 -0.70 16 4 N -0.18 -4.16 4.06 -169.37 -0.69 -4.85 16 5 N 0.00 0.01 12.99 37.02 0.48 0.49 16 6 N -0.34 -12.77 10.56 -58.77 -0.62 -13.39 16 7 C 0.41 13.35 8.97 260.69 2.34 15.69 16 8 N -0.61 -17.51 5.44 -312.70 -1.70 -19.22 16 9 C 0.54 20.23 7.81 87.66 0.68 20.91 16 10 O -0.50 -24.23 14.59 -3.07 -0.04 -24.28 16 11 C -0.12 -4.51 6.16 71.23 0.44 -4.07 16 12 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 13 C -0.55 -30.29 9.50 67.95 0.65 -29.64 16 14 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 15 C 0.01 0.71 5.49 84.86 0.47 1.17 16 16 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 17 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 N -0.33 -8.70 12.79 -58.76 -0.75 -9.45 16 22 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.13 0.15 8.14 -2.39 -0.02 0.14 16 24 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.14 0.99 8.14 -2.38 -0.02 0.98 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.45 8.61 8.82 -92.71 -0.82 7.79 16 30 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 31 H 0.13 4.05 8.14 -2.40 -0.02 4.03 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -82.17 304.02 4.27 -77.90 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.33 Total: 7.89 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.11 Total: 4.51 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -2.99 Total: -101.92 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.28 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -82.17 4.27 -77.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332229979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.205 kcal (2) G-P(sol) polarization free energy of solvation -82.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds