Wall clock time and date at job start Mon Mar 30 2020 00:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47601 * 119.99776 * 3 2 1 6 6 H 1.48506 * 109.47155 * 240.00051 * 3 2 1 7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00299 * 193.82037 * 7 2 1 9 9 C 1.50699 * 119.99686 * 13.82310 * 7 2 1 10 10 O 1.42901 * 112.94096 * 53.33976 * 9 7 2 11 11 C 1.53940 * 113.73240 * 281.63224 * 9 7 2 12 12 N 1.47957 * 86.18105 * 221.92205 * 11 9 7 13 13 C 1.38539 * 111.00258 * 137.58229 * 12 11 9 14 14 C 1.39669 * 120.52841 * 80.63718 * 13 12 11 15 15 C 1.38078 * 118.33086 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.40042 * 179.97438 * 15 14 13 17 17 F 1.39898 * 109.47304 * 210.00278 * 16 15 14 18 18 F 1.39899 * 109.46878 * 329.99862 * 16 15 14 19 19 N 1.32581 * 119.19952 * 0.02562 * 15 14 13 20 20 C 1.31760 * 121.01455 * 359.97438 * 19 15 14 21 21 N 1.31781 * 121.82860 * 359.71972 * 20 19 15 22 22 C 1.47962 * 90.76408 * 24.69162 * 12 11 9 23 23 H 0.97001 * 119.99982 * 185.88094 * 1 2 3 24 24 H 0.96693 * 113.99776 * 303.03764 * 10 9 7 25 25 H 1.08994 * 113.76253 * 336.24193 * 11 9 7 26 26 H 1.09001 * 113.75976 * 107.61000 * 11 9 7 27 27 H 1.07993 * 120.83762 * 359.97438 * 14 13 12 28 28 H 1.09002 * 109.47361 * 89.99972 * 16 15 14 29 29 H 1.07997 * 119.08261 * 179.97438 * 20 19 15 30 30 H 1.08999 * 113.76019 * 220.99396 * 22 12 11 31 31 H 1.09000 * 113.85879 * 89.64168 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0611 -1.2076 0.2240 9 6 1.2838 -2.4804 -0.3107 10 8 0.5652 -2.4316 -1.5449 11 6 0.4593 -3.0293 0.8677 12 7 0.9801 -4.3599 0.4835 13 6 1.3477 -5.0909 1.6014 14 6 0.3852 -5.7652 2.3561 15 6 0.8018 -6.4797 3.4618 16 6 -0.1972 -7.2241 4.3096 17 9 0.2576 -7.2730 5.6316 18 9 -1.4301 -6.5645 4.2647 19 7 2.0913 -6.5021 3.7691 20 6 2.9751 -5.8552 3.0367 21 7 2.6229 -5.1660 1.9702 22 6 2.1608 -3.7357 -0.1536 23 1 -0.4850 -0.8356 0.0861 24 1 -0.0834 -1.7161 -1.5944 25 1 0.8054 -2.6871 1.8429 26 1 -0.6177 -2.9248 0.7366 27 1 -0.6588 -5.7281 2.0823 28 1 -0.3137 -8.2384 3.9277 29 1 4.0177 -5.8943 3.3158 30 1 2.4432 -4.1954 -1.1006 31 1 3.0056 -3.5995 0.5216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334199573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:24 Heat of formation + Delta-G solvation = -51.675798 kcal Electronic energy + Delta-G solvation = -20640.058488 eV Core-core repulsion = 16980.196972 eV Total energy + Delta-G solvation = -3659.861516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.21525 -47.22013 -41.37811 -39.28529 -35.29996 -33.60945 -32.37566 -32.04342 -28.30887 -26.94885 -25.79673 -24.52140 -23.85236 -21.75867 -19.27243 -18.50204 -18.03640 -17.78764 -17.50614 -16.69639 -15.62917 -15.52945 -15.43063 -15.08809 -14.54292 -14.22815 -14.00807 -13.85915 -13.54245 -13.27674 -13.02057 -12.61665 -12.25072 -11.80089 -11.32552 -11.27538 -11.01332 -10.94479 -10.65456 -10.46520 -10.22246 -9.90985 -9.40301 -9.31407 -8.86014 -8.76987 -8.06057 -6.68668 -4.47682 0.72792 0.93625 3.07871 3.30390 3.33981 3.52173 3.53934 3.78932 3.79634 4.03349 4.31265 4.48298 4.58743 4.74090 4.81039 4.97663 5.21810 5.32770 5.52907 5.64432 5.71589 5.95939 6.08259 6.33171 6.41845 6.49166 6.87567 6.96418 7.43236 7.66156 8.01715 8.09777 8.45033 8.84990 9.22416 10.62651 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.004774 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.408330 B = 5864.087175 C = 5948.598759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.618 4.618 8 H 0.064 0.936 9 C 0.224 3.776 10 O -0.563 6.563 11 C -0.002 4.002 12 N -0.439 5.439 13 C 0.344 3.656 14 C -0.197 4.197 15 C 0.101 3.899 16 C 0.331 3.669 17 F -0.185 7.185 18 F -0.190 7.190 19 N -0.520 5.520 20 C 0.319 3.681 21 N -0.538 5.538 22 C 0.035 3.965 23 H 0.268 0.732 24 H 0.374 0.626 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.133 0.867 29 H 0.202 0.798 30 H 0.082 0.918 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -11.669 6.202 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.170 4.170 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.655 4.655 8 H 0.082 0.918 9 C 0.183 3.817 10 O -0.370 6.370 11 C -0.129 4.129 12 N -0.158 5.158 13 C 0.104 3.896 14 C -0.222 4.222 15 C -0.044 4.044 16 C 0.277 3.723 17 F -0.166 7.166 18 F -0.171 7.171 19 N -0.237 5.237 20 C 0.030 3.970 21 N -0.257 5.257 22 C -0.093 4.093 23 H 0.080 0.920 24 H 0.223 0.777 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.172 0.828 28 H 0.151 0.849 29 H 0.218 0.782 30 H 0.101 0.899 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.153 -11.013 5.875 12.535 hybrid contribution -0.592 -0.864 0.609 1.212 sum 0.561 -11.877 6.484 13.543 Atomic orbital electron populations 1.70938 1.06978 1.30730 1.44727 1.25989 0.96228 1.03044 0.91694 0.83597 0.75185 0.74999 0.76967 1.20510 1.21185 1.20921 1.22291 0.97755 0.92187 1.53293 0.91775 1.20069 0.87671 0.93316 0.80666 1.86256 1.56977 1.56186 1.37542 1.25160 1.01705 0.83372 1.02617 1.65948 1.21939 1.14404 1.13475 1.21162 0.87934 0.91110 0.89415 1.22127 1.02804 1.00356 0.96959 1.21844 0.92909 0.95650 0.94013 1.20012 0.77223 0.96234 0.78870 1.93038 1.89045 1.97355 1.37134 1.93042 1.43967 1.83809 1.96324 1.68049 1.01312 1.22256 1.32046 1.24852 0.99665 0.86911 0.85614 1.68533 1.19378 1.20224 1.17524 1.24129 0.92966 0.93124 0.99032 0.91989 0.77737 0.90671 0.89843 0.82754 0.84949 0.78183 0.89915 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 12.80 55.43 0.71 -23.38 16 2 C 0.04 0.95 5.26 -17.82 -0.09 0.85 16 3 Si 1.07 23.25 29.93 -169.99 -5.09 18.16 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.62 -16.08 8.56 -34.44 -0.29 -16.37 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 9 C 0.22 5.35 1.08 -90.83 -0.10 5.26 16 10 O -0.56 -13.86 13.45 -35.23 -0.47 -14.33 16 11 C 0.00 -0.05 6.32 -2.77 -0.02 -0.07 16 12 N -0.44 -8.85 6.26 -176.44 -1.10 -9.95 16 13 C 0.34 6.24 5.89 -154.79 -0.91 5.33 16 14 C -0.20 -3.07 9.40 -39.11 -0.37 -3.43 16 15 C 0.10 1.43 6.60 -82.33 -0.54 0.88 16 16 C 0.33 3.69 5.74 36.00 0.21 3.90 16 17 F -0.18 -2.37 17.09 2.25 0.04 -2.34 16 18 F -0.19 -2.32 16.55 2.25 0.04 -2.28 16 19 N -0.52 -7.66 10.09 -10.88 -0.11 -7.77 16 20 C 0.32 4.62 12.28 -92.19 -1.13 3.49 16 21 N -0.54 -9.32 8.37 -13.81 -0.12 -9.43 16 22 C 0.03 0.74 7.05 -2.76 -0.02 0.72 16 23 H 0.27 7.01 5.52 -40.82 -0.23 6.79 16 24 H 0.37 9.04 6.95 45.56 0.32 9.35 16 25 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 26 H 0.08 1.77 7.79 -51.93 -0.40 1.36 16 27 H 0.15 2.19 7.68 -52.49 -0.40 1.78 16 28 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.20 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 31 H 0.10 2.23 6.66 -51.93 -0.35 1.88 16 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -29.14 278.69 -7.12 -36.26 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -1.95 Total: 10.31 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.27 Total: 0.55 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.62 Total: -50.52 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.47 Total: -14.33 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.08 Total: -4.62 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.09 Total: 18.16 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.14 -7.12 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334199573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.414 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds