Wall clock time and date at job start Mon Mar 30 2020 00:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47601 * 119.99776 * 3 2 1 6 6 H 1.48506 * 109.47155 * 240.00051 * 3 2 1 7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00299 * 193.82037 * 7 2 1 9 9 C 1.50699 * 119.99686 * 13.82310 * 7 2 1 10 10 O 1.42901 * 112.94096 * 53.33976 * 9 7 2 11 11 C 1.53940 * 113.73240 * 281.63224 * 9 7 2 12 12 N 1.47957 * 86.18105 * 221.92205 * 11 9 7 13 13 C 1.38539 * 111.00258 * 137.58229 * 12 11 9 14 14 C 1.39669 * 120.52841 * 80.63718 * 13 12 11 15 15 C 1.38078 * 118.33086 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.40042 * 179.97438 * 15 14 13 17 17 F 1.39898 * 109.47304 * 210.00278 * 16 15 14 18 18 F 1.39899 * 109.46878 * 329.99862 * 16 15 14 19 19 N 1.32581 * 119.19952 * 0.02562 * 15 14 13 20 20 C 1.31760 * 121.01455 * 359.97438 * 19 15 14 21 21 N 1.31781 * 121.82860 * 359.71972 * 20 19 15 22 22 C 1.47962 * 90.76408 * 24.69162 * 12 11 9 23 23 H 0.97001 * 119.99982 * 185.88094 * 1 2 3 24 24 H 0.96693 * 113.99776 * 303.03764 * 10 9 7 25 25 H 1.08994 * 113.76253 * 336.24193 * 11 9 7 26 26 H 1.09001 * 113.75976 * 107.61000 * 11 9 7 27 27 H 1.07993 * 120.83762 * 359.97438 * 14 13 12 28 28 H 1.09002 * 109.47361 * 89.99972 * 16 15 14 29 29 H 1.07997 * 119.08261 * 179.97438 * 20 19 15 30 30 H 1.08999 * 113.76019 * 220.99396 * 22 12 11 31 31 H 1.09000 * 113.85879 * 89.64168 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0611 -1.2076 0.2240 9 6 1.2838 -2.4804 -0.3107 10 8 0.5652 -2.4316 -1.5449 11 6 0.4593 -3.0293 0.8677 12 7 0.9801 -4.3599 0.4835 13 6 1.3477 -5.0909 1.6014 14 6 0.3852 -5.7652 2.3561 15 6 0.8018 -6.4797 3.4618 16 6 -0.1972 -7.2241 4.3096 17 9 0.2576 -7.2730 5.6316 18 9 -1.4301 -6.5645 4.2647 19 7 2.0913 -6.5021 3.7691 20 6 2.9751 -5.8552 3.0367 21 7 2.6229 -5.1660 1.9702 22 6 2.1608 -3.7357 -0.1536 23 1 -0.4850 -0.8356 0.0861 24 1 -0.0834 -1.7161 -1.5944 25 1 0.8054 -2.6871 1.8429 26 1 -0.6177 -2.9248 0.7366 27 1 -0.6588 -5.7281 2.0823 28 1 -0.3137 -8.2384 3.9277 29 1 4.0177 -5.8943 3.3158 30 1 2.4432 -4.1954 -1.1006 31 1 3.0056 -3.5995 0.5216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334199573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:23 Heat of formation + Delta-G solvation = -72.204520 kcal Electronic energy + Delta-G solvation = -20640.948680 eV Core-core repulsion = 16980.196972 eV Total energy + Delta-G solvation = -3660.751708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.14109 -48.15639 -42.73323 -40.83838 -37.03479 -34.88842 -34.35779 -33.38611 -29.74259 -28.31459 -27.45840 -26.25343 -25.09180 -23.09964 -21.02258 -20.20130 -19.24996 -18.88190 -18.64159 -17.85948 -17.16589 -16.90736 -16.74240 -16.68378 -15.89369 -15.77463 -15.57068 -14.96309 -14.92863 -14.47961 -14.34466 -14.06652 -14.00365 -13.22947 -13.08328 -12.71752 -12.62385 -12.41013 -12.31763 -11.94800 -11.82883 -11.30220 -11.10296 -10.77578 -10.63893 -10.44460 -9.81161 -8.72493 -6.52825 -0.45038 -0.34604 1.55858 1.59747 1.81734 2.03887 2.28508 2.47395 2.54316 2.83303 2.94532 2.99135 3.10592 3.54731 3.62436 3.80427 3.83632 3.89368 3.92713 4.08178 4.33393 4.35639 4.53104 4.64615 4.75051 5.04669 5.06389 5.68554 5.72590 5.86782 6.03383 6.41409 6.79750 6.91897 7.23202 8.59781 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.004774 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.408330 B = 5864.087175 C = 5948.598759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 1.109 2.891 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.636 4.636 8 H 0.056 0.944 9 C 0.204 3.796 10 O -0.569 6.569 11 C 0.012 3.988 12 N -0.436 5.436 13 C 0.317 3.683 14 C -0.199 4.199 15 C 0.106 3.894 16 C 0.334 3.666 17 F -0.194 7.194 18 F -0.196 7.196 19 N -0.520 5.520 20 C 0.318 3.682 21 N -0.557 5.557 22 C 0.044 3.956 23 H 0.264 0.736 24 H 0.372 0.628 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.184 0.816 29 H 0.237 0.763 30 H 0.083 0.917 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -12.746 7.196 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.205 4.205 3 Si 0.931 3.069 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.673 4.673 8 H 0.074 0.926 9 C 0.163 3.837 10 O -0.376 6.376 11 C -0.115 4.115 12 N -0.155 5.155 13 C 0.078 3.922 14 C -0.224 4.224 15 C -0.041 4.041 16 C 0.279 3.721 17 F -0.175 7.175 18 F -0.177 7.177 19 N -0.236 5.236 20 C 0.030 3.970 21 N -0.276 5.276 22 C -0.084 4.084 23 H 0.075 0.925 24 H 0.221 0.779 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.183 0.817 28 H 0.201 0.799 29 H 0.253 0.747 30 H 0.101 0.899 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.531 -12.123 6.879 14.023 hybrid contribution -0.671 -0.627 0.377 0.993 sum 0.860 -12.750 7.257 14.696 Atomic orbital electron populations 1.71008 1.07550 1.30610 1.46031 1.27147 0.96422 1.05936 0.90959 0.83025 0.74396 0.71690 0.77785 1.20658 1.19881 1.19850 1.22536 0.97596 0.93616 1.53562 0.92604 1.20282 0.88763 0.93655 0.81015 1.86237 1.57015 1.56085 1.38271 1.24765 1.01275 0.84696 1.00788 1.65878 1.21192 1.13591 1.14814 1.21167 0.89150 0.92148 0.89784 1.22222 1.02874 1.00138 0.97118 1.22382 0.93376 0.94662 0.93655 1.20455 0.75877 0.97778 0.77947 1.93023 1.89163 1.97407 1.37890 1.93036 1.44191 1.84239 1.96278 1.68183 1.01666 1.21933 1.31778 1.25585 1.01208 0.85763 0.84476 1.68491 1.19162 1.21197 1.18747 1.23964 0.93120 0.92120 0.99198 0.92489 0.77938 0.92133 0.89730 0.81681 0.79907 0.74673 0.89851 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.53 12.80 21.45 0.27 -49.25 16 2 C 0.00 -0.16 5.26 84.65 0.45 0.28 16 3 Si 1.11 46.62 29.93 68.60 2.05 48.68 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.64 -33.47 8.56 25.60 0.22 -33.25 16 8 H 0.06 2.95 7.85 -2.91 -0.02 2.93 16 9 C 0.20 9.87 1.08 -10.89 -0.01 9.86 16 10 O -0.57 -28.48 13.45 -148.98 -2.00 -30.48 16 11 C 0.01 0.51 6.32 86.41 0.55 1.06 16 12 N -0.44 -17.55 6.26 -715.32 -4.48 -22.02 16 13 C 0.32 11.26 5.89 133.18 0.78 12.04 16 14 C -0.20 -5.88 9.40 22.58 0.21 -5.67 16 15 C 0.11 2.72 6.60 42.41 0.28 3.00 16 16 C 0.33 6.37 5.74 71.24 0.41 6.78 16 17 F -0.19 -4.44 17.09 44.97 0.77 -3.68 16 18 F -0.20 -4.29 16.55 44.97 0.74 -3.55 16 19 N -0.52 -13.99 10.09 -188.35 -1.90 -15.89 16 20 C 0.32 8.55 12.28 180.90 2.22 10.77 16 21 N -0.56 -18.71 8.37 -197.60 -1.65 -20.36 16 22 C 0.04 1.88 7.05 86.41 0.61 2.49 16 23 H 0.26 14.05 5.52 -92.71 -0.51 13.54 16 24 H 0.37 18.42 6.95 -74.06 -0.52 17.90 16 25 H 0.06 2.80 7.86 -2.39 -0.02 2.78 16 26 H 0.08 3.64 7.79 -2.39 -0.02 3.62 16 27 H 0.17 4.42 7.68 -2.91 -0.02 4.40 16 28 H 0.18 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.24 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.10 4.43 6.66 -2.39 -0.02 4.42 16 Total: -1.00 -62.04 278.69 0.45 -61.59 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.93 Total: 27.60 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.72 Total: 7.37 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -7.76 Total: -107.53 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -2.00 Total: -30.48 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.51 Total: -7.23 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.05 Total: 48.68 kcal Total: -62.04 0.45 -61.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334199573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.613 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds