Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47025 * 2 1 4 4 C 1.36672 * 120.00031 * 264.86002 * 3 2 1 5 5 H 1.08005 * 119.99872 * 189.20477 * 4 3 2 6 6 C 1.39179 * 120.00253 * 8.92654 * 4 3 2 7 7 N 1.31272 * 119.99704 * 27.89872 * 6 4 3 8 8 Si 1.86797 * 120.00271 * 207.89783 * 6 4 3 9 9 H 1.48504 * 109.47064 * 89.99802 * 8 6 4 10 10 H 1.48498 * 109.47468 * 210.00061 * 8 6 4 11 11 H 1.48503 * 109.47422 * 330.00084 * 8 6 4 12 12 C 1.34779 * 119.99477 * 84.86056 * 3 2 1 13 13 O 1.21546 * 119.99560 * 173.95175 * 12 3 2 14 14 C 1.48238 * 120.00185 * 353.94822 * 12 3 2 15 15 C 1.39677 * 120.55594 * 175.19171 * 14 12 3 16 16 C 1.38679 * 118.25438 * 179.97438 * 15 14 12 17 17 C 1.50703 * 120.41709 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.46747 * 299.99979 * 17 16 15 19 19 F 1.39892 * 109.47306 * 60.00192 * 17 16 15 20 20 N 1.32248 * 119.15927 * 0.02562 * 16 15 14 21 21 C 1.31883 * 121.06684 * 0.02562 * 20 16 15 22 22 N 1.31576 * 121.92124 * 359.73365 * 21 20 16 23 23 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47226 * 299.99578 * 1 2 3 25 25 H 1.08996 * 109.47459 * 60.00048 * 1 2 3 26 26 H 1.08999 * 109.47226 * 240.00422 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00336 * 2 1 3 28 28 H 0.97009 * 119.99776 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.87154 * 359.95752 * 15 14 12 30 30 H 1.08994 * 109.46824 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.04396 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3461 1.9902 -1.1789 5 1 2.8436 2.9488 -1.1714 6 6 2.0439 1.3724 -2.3889 7 7 1.0241 0.5497 -2.4690 8 14 3.0894 1.7139 -3.8987 9 1 4.2036 0.7340 -3.9612 10 1 2.2523 1.5901 -5.1189 11 1 3.6439 3.0891 -3.8162 12 6 2.1443 2.0514 1.1626 13 8 2.6517 3.1558 1.1755 14 6 1.6641 1.4415 2.4255 15 6 1.8783 2.0804 3.6490 16 6 1.4083 1.4675 4.8008 17 6 1.6122 2.1141 6.1467 18 9 2.9817 2.2686 6.3871 19 9 0.9919 3.3679 6.1604 20 7 0.7791 0.3084 4.7030 21 6 0.5941 -0.2690 3.5318 22 7 1.0181 0.2771 2.4123 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.8133 0.1193 -3.3125 29 1 2.3964 3.0267 3.6967 30 1 1.1763 1.4842 6.9220 31 1 0.0755 -1.2154 3.4899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334273729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -50.872554 kcal Electronic energy + Delta-G solvation = -20863.455531 eV Core-core repulsion = 17203.628847 eV Total energy + Delta-G solvation = -3659.826684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.08429 -47.07774 -40.84728 -38.38557 -35.33525 -33.98531 -32.07416 -31.86611 -29.47459 -27.44939 -26.00093 -24.01655 -23.14262 -22.18595 -20.04026 -18.16395 -17.60224 -17.33357 -17.00696 -16.65915 -15.53134 -15.18912 -15.07299 -14.74906 -14.48333 -14.13237 -13.96336 -13.52042 -13.44217 -13.06464 -12.86516 -12.58273 -12.11477 -11.53372 -11.36610 -11.24896 -10.98055 -10.68182 -10.60800 -10.50092 -10.32592 -9.62274 -9.44363 -9.16597 -9.05748 -8.48410 -8.00943 -6.74522 -3.98341 0.82088 1.02895 2.97550 3.09716 3.14233 3.25243 3.46396 3.82243 4.02667 4.19145 4.24497 4.35113 4.74008 4.84529 4.88691 4.94827 5.22552 5.38903 5.73928 5.87098 6.33889 6.52210 6.66365 6.74972 6.98314 7.05767 7.12707 7.27354 7.69845 7.80778 8.15400 8.26634 8.87357 9.09332 9.76689 10.19158 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.005233 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.781192 B = 5349.811425 C = 5918.337102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.122 3.878 3 N -0.381 5.381 4 C -0.295 4.295 5 H 0.116 0.884 6 C 0.038 3.962 7 N -0.819 5.819 8 Si 0.927 3.073 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.441 3.559 13 O -0.596 6.596 14 C 0.163 3.837 15 C -0.150 4.150 16 C 0.081 3.919 17 C 0.330 3.670 18 F -0.192 7.192 19 F -0.191 7.191 20 N -0.515 5.515 21 C 0.284 3.716 22 N -0.477 5.477 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.277 0.723 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -4.057 9.353 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 N -0.094 5.094 4 C -0.425 4.425 5 H 0.133 0.867 6 C -0.172 4.172 7 N -0.455 5.455 8 Si 0.752 3.248 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.188 1.188 12 C 0.231 3.769 13 O -0.484 6.484 14 C 0.017 3.983 15 C -0.175 4.175 16 C -0.065 4.065 17 C 0.275 3.725 18 F -0.173 7.173 19 F -0.173 7.173 20 N -0.231 5.231 21 C -0.004 4.004 22 N -0.195 5.195 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.150 0.850 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.836 -4.489 9.150 10.356 hybrid contribution 0.681 0.734 -0.672 1.206 sum -1.155 -3.755 8.478 9.344 Atomic orbital electron populations 1.21967 0.95707 0.99741 1.01671 1.21714 0.95716 0.81967 1.00713 1.43990 1.48628 1.11619 1.05140 1.20067 1.34660 1.06073 0.81708 0.86655 1.25521 0.95537 0.96311 0.99842 1.70142 1.20798 1.26786 1.27724 0.85906 0.79857 0.79842 0.79208 1.19769 1.20569 1.18751 1.17135 0.90742 0.86637 0.82345 1.90625 1.51836 1.20841 1.85070 1.22216 0.91512 0.89355 0.95230 1.22552 1.00007 1.02632 0.92273 1.21726 0.96625 0.93162 0.94954 1.20039 0.75648 0.81730 0.95048 1.93037 1.33012 1.96103 1.95156 1.93037 1.82310 1.44479 1.97433 1.67824 1.15314 1.09401 1.30602 1.24989 0.94001 0.99035 0.82389 1.69291 1.09678 1.10437 1.30073 0.94650 0.94561 0.89818 0.90096 0.91703 0.91217 0.82685 0.84973 0.78460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.00 37.16 0.33 -2.44 16 2 C 0.12 2.70 4.87 -4.04 -0.02 2.68 16 3 N -0.38 -9.60 2.62 -115.76 -0.30 -9.91 16 4 C -0.30 -7.74 9.41 -15.04 -0.14 -7.88 16 5 H 0.12 3.18 7.32 -52.48 -0.38 2.80 16 6 C 0.04 0.90 4.80 -17.44 -0.08 0.82 16 7 N -0.82 -19.33 8.65 55.51 0.48 -18.85 16 8 Si 0.93 18.68 29.63 -169.99 -5.04 13.64 16 9 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 12 C 0.44 11.13 7.58 -12.15 -0.09 11.04 16 13 O -0.60 -16.67 16.03 5.32 0.09 -16.59 16 14 C 0.16 3.45 6.50 -82.64 -0.54 2.92 16 15 C -0.15 -2.84 9.32 -38.88 -0.36 -3.20 16 16 C 0.08 1.30 6.31 -82.25 -0.52 0.78 16 17 C 0.33 4.25 5.58 36.01 0.20 4.45 16 18 F -0.19 -2.66 17.27 2.25 0.04 -2.62 16 19 F -0.19 -2.69 17.27 2.25 0.04 -2.65 16 20 N -0.51 -7.90 10.35 -10.82 -0.11 -8.01 16 21 C 0.28 4.34 12.28 -92.26 -1.13 3.21 16 22 N -0.48 -8.88 4.11 -11.15 -0.05 -8.93 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.75 6.11 -51.93 -0.32 0.44 16 25 H 0.08 1.96 6.09 -51.93 -0.32 1.65 16 26 H 0.08 1.87 6.05 -51.93 -0.31 1.56 16 27 H 0.07 1.35 5.77 -51.93 -0.30 1.05 16 28 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 29 H 0.16 2.96 7.74 -52.49 -0.41 2.55 16 30 H 0.13 1.24 8.12 -51.93 -0.42 0.82 16 31 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 274.60 15.07 4.14 4.14 Total: -1.00 -28.46 274.60 -5.51 -33.97 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.44 Total: 3.44 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -2.35 Total: 12.36 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.02 Total: -45.69 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.59 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.08 Total: -5.27 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.04 Total: 13.64 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.46 -5.51 -33.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334273729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.906 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds