Wall clock time and date at job start Mon Mar 30 2020 01:26:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46505 * 109.47025 * 2 1
4 4 C 1.36672 * 120.00031 * 264.86002 * 3 2 1
5 5 H 1.08005 * 119.99872 * 189.20477 * 4 3 2
6 6 C 1.39179 * 120.00253 * 8.92654 * 4 3 2
7 7 N 1.31272 * 119.99704 * 27.89872 * 6 4 3
8 8 Si 1.86797 * 120.00271 * 207.89783 * 6 4 3
9 9 H 1.48504 * 109.47064 * 89.99802 * 8 6 4
10 10 H 1.48498 * 109.47468 * 210.00061 * 8 6 4
11 11 H 1.48503 * 109.47422 * 330.00084 * 8 6 4
12 12 C 1.34779 * 119.99477 * 84.86056 * 3 2 1
13 13 O 1.21546 * 119.99560 * 173.95175 * 12 3 2
14 14 C 1.48238 * 120.00185 * 353.94822 * 12 3 2
15 15 C 1.39677 * 120.55594 * 175.19171 * 14 12 3
16 16 C 1.38679 * 118.25438 * 179.97438 * 15 14 12
17 17 C 1.50703 * 120.41709 * 180.02562 * 16 15 14
18 18 F 1.39905 * 109.46747 * 299.99979 * 17 16 15
19 19 F 1.39892 * 109.47306 * 60.00192 * 17 16 15
20 20 N 1.32248 * 119.15927 * 0.02562 * 16 15 14
21 21 C 1.31883 * 121.06684 * 0.02562 * 20 16 15
22 22 N 1.31576 * 121.92124 * 359.73365 * 21 20 16
23 23 H 1.09004 * 109.46868 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.47226 * 299.99578 * 1 2 3
25 25 H 1.08996 * 109.47459 * 60.00048 * 1 2 3
26 26 H 1.08999 * 109.47226 * 240.00422 * 2 1 3
27 27 H 1.08997 * 109.47079 * 120.00336 * 2 1 3
28 28 H 0.97009 * 119.99776 * 179.97438 * 7 6 4
29 29 H 1.07995 * 120.87154 * 359.95752 * 15 14 12
30 30 H 1.08994 * 109.46824 * 180.02562 * 17 16 15
31 31 H 1.07999 * 119.04396 * 180.02562 * 21 20 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3461 1.9902 -1.1789
5 1 2.8436 2.9488 -1.1714
6 6 2.0439 1.3724 -2.3889
7 7 1.0241 0.5497 -2.4690
8 14 3.0894 1.7139 -3.8987
9 1 4.2036 0.7340 -3.9612
10 1 2.2523 1.5901 -5.1189
11 1 3.6439 3.0891 -3.8162
12 6 2.1443 2.0514 1.1626
13 8 2.6517 3.1558 1.1755
14 6 1.6641 1.4415 2.4255
15 6 1.8783 2.0804 3.6490
16 6 1.4083 1.4675 4.8008
17 6 1.6122 2.1141 6.1467
18 9 2.9817 2.2686 6.3871
19 9 0.9919 3.3679 6.1604
20 7 0.7791 0.3084 4.7030
21 6 0.5941 -0.2690 3.5318
22 7 1.0181 0.2771 2.4123
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8899
28 1 0.8133 0.1193 -3.3125
29 1 2.3964 3.0267 3.6967
30 1 1.1763 1.4842 6.9220
31 1 0.0755 -1.2154 3.4899
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001334273729.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:44
Heat of formation + Delta-G solvation = -50.872554 kcal
Electronic energy + Delta-G solvation = -20863.455531 eV
Core-core repulsion = 17203.628847 eV
Total energy + Delta-G solvation = -3659.826684 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 271.087 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-49.08429 -47.07774 -40.84728 -38.38557 -35.33525 -33.98531 -32.07416 -31.86611
-29.47459 -27.44939 -26.00093 -24.01655 -23.14262 -22.18595 -20.04026 -18.16395
-17.60224 -17.33357 -17.00696 -16.65915 -15.53134 -15.18912 -15.07299 -14.74906
-14.48333 -14.13237 -13.96336 -13.52042 -13.44217 -13.06464 -12.86516 -12.58273
-12.11477 -11.53372 -11.36610 -11.24896 -10.98055 -10.68182 -10.60800 -10.50092
-10.32592 -9.62274 -9.44363 -9.16597 -9.05748 -8.48410 -8.00943 -6.74522
-3.98341 0.82088 1.02895 2.97550 3.09716 3.14233 3.25243 3.46396
3.82243 4.02667 4.19145 4.24497 4.35113 4.74008 4.84529 4.88691
4.94827 5.22552 5.38903 5.73928 5.87098 6.33889 6.52210 6.66365
6.74972 6.98314 7.05767 7.12707 7.27354 7.69845 7.80778 8.15400
8.26634 8.87357 9.09332 9.76689 10.19158
Molecular weight = 271.09amu
Principal moments of inertia in cm(-1)
A = 0.033614 B = 0.005233 C = 0.004730
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 832.781192 B = 5349.811425 C = 5918.337102
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.122 3.878
3 N -0.381 5.381
4 C -0.295 4.295
5 H 0.116 0.884
6 C 0.038 3.962
7 N -0.819 5.819
8 Si 0.927 3.073
9 H -0.272 1.272
10 H -0.280 1.280
11 H -0.263 1.263
12 C 0.441 3.559
13 O -0.596 6.596
14 C 0.163 3.837
15 C -0.150 4.150
16 C 0.081 3.919
17 C 0.330 3.670
18 F -0.192 7.192
19 F -0.191 7.191
20 N -0.515 5.515
21 C 0.284 3.716
22 N -0.477 5.477
23 H 0.034 0.966
24 H 0.036 0.964
25 H 0.083 0.917
26 H 0.081 0.919
27 H 0.065 0.935
28 H 0.277 0.723
29 H 0.155 0.845
30 H 0.133 0.867
31 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.513 -4.057 9.353 10.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.001 4.001
3 N -0.094 5.094
4 C -0.425 4.425
5 H 0.133 0.867
6 C -0.172 4.172
7 N -0.455 5.455
8 Si 0.752 3.248
9 H -0.198 1.198
10 H -0.206 1.206
11 H -0.188 1.188
12 C 0.231 3.769
13 O -0.484 6.484
14 C 0.017 3.983
15 C -0.175 4.175
16 C -0.065 4.065
17 C 0.275 3.725
18 F -0.173 7.173
19 F -0.173 7.173
20 N -0.231 5.231
21 C -0.004 4.004
22 N -0.195 5.195
23 H 0.053 0.947
24 H 0.054 0.946
25 H 0.102 0.898
26 H 0.099 0.901
27 H 0.083 0.917
28 H 0.088 0.912
29 H 0.173 0.827
30 H 0.150 0.850
31 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges -1.836 -4.489 9.150 10.356
hybrid contribution 0.681 0.734 -0.672 1.206
sum -1.155 -3.755 8.478 9.344
Atomic orbital electron populations
1.21967 0.95707 0.99741 1.01671 1.21714 0.95716 0.81967 1.00713
1.43990 1.48628 1.11619 1.05140 1.20067 1.34660 1.06073 0.81708
0.86655 1.25521 0.95537 0.96311 0.99842 1.70142 1.20798 1.26786
1.27724 0.85906 0.79857 0.79842 0.79208 1.19769 1.20569 1.18751
1.17135 0.90742 0.86637 0.82345 1.90625 1.51836 1.20841 1.85070
1.22216 0.91512 0.89355 0.95230 1.22552 1.00007 1.02632 0.92273
1.21726 0.96625 0.93162 0.94954 1.20039 0.75648 0.81730 0.95048
1.93037 1.33012 1.96103 1.95156 1.93037 1.82310 1.44479 1.97433
1.67824 1.15314 1.09401 1.30602 1.24989 0.94001 0.99035 0.82389
1.69291 1.09678 1.10437 1.30073 0.94650 0.94561 0.89818 0.90096
0.91703 0.91217 0.82685 0.84973 0.78460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.77 9.00 37.16 0.33 -2.44 16
2 C 0.12 2.70 4.87 -4.04 -0.02 2.68 16
3 N -0.38 -9.60 2.62 -115.76 -0.30 -9.91 16
4 C -0.30 -7.74 9.41 -15.04 -0.14 -7.88 16
5 H 0.12 3.18 7.32 -52.48 -0.38 2.80 16
6 C 0.04 0.90 4.80 -17.44 -0.08 0.82 16
7 N -0.82 -19.33 8.65 55.51 0.48 -18.85 16
8 Si 0.93 18.68 29.63 -169.99 -5.04 13.64 16
9 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16
11 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16
12 C 0.44 11.13 7.58 -12.15 -0.09 11.04 16
13 O -0.60 -16.67 16.03 5.32 0.09 -16.59 16
14 C 0.16 3.45 6.50 -82.64 -0.54 2.92 16
15 C -0.15 -2.84 9.32 -38.88 -0.36 -3.20 16
16 C 0.08 1.30 6.31 -82.25 -0.52 0.78 16
17 C 0.33 4.25 5.58 36.01 0.20 4.45 16
18 F -0.19 -2.66 17.27 2.25 0.04 -2.62 16
19 F -0.19 -2.69 17.27 2.25 0.04 -2.65 16
20 N -0.51 -7.90 10.35 -10.82 -0.11 -8.01 16
21 C 0.28 4.34 12.28 -92.26 -1.13 3.21 16
22 N -0.48 -8.88 4.11 -11.15 -0.05 -8.93 16
23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
24 H 0.04 0.75 6.11 -51.93 -0.32 0.44 16
25 H 0.08 1.96 6.09 -51.93 -0.32 1.65 16
26 H 0.08 1.87 6.05 -51.93 -0.31 1.56 16
27 H 0.07 1.35 5.77 -51.93 -0.30 1.05 16
28 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16
29 H 0.16 2.96 7.74 -52.49 -0.41 2.55 16
30 H 0.13 1.24 8.12 -51.93 -0.42 0.82 16
31 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16
LS Contribution 274.60 15.07 4.14 4.14
Total: -1.00 -28.46 274.60 -5.51 -33.97
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -2.44 Total: 3.44 kcal
Atomic # 6 Polarization: 14.72 SS G_CDS: -2.35 Total: 12.36 kcal
Atomic # 7 Polarization: -45.71 SS G_CDS: 0.02 Total: -45.69 kcal
Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.59 kcal
Atomic # 9 Polarization: -5.35 SS G_CDS: 0.08 Total: -5.27 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -5.04 Total: 13.64 kcal
Total LS contribution 4.14 Total: 4.14 kcal
Total: -28.46 -5.51 -33.97 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001334273729.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.906 kcal
(2) G-P(sol) polarization free energy of solvation -28.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds