Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47025 * 2 1 4 4 C 1.36672 * 120.00031 * 264.86002 * 3 2 1 5 5 H 1.08005 * 119.99872 * 189.20477 * 4 3 2 6 6 C 1.39179 * 120.00253 * 8.92654 * 4 3 2 7 7 N 1.31272 * 119.99704 * 27.89872 * 6 4 3 8 8 Si 1.86797 * 120.00271 * 207.89783 * 6 4 3 9 9 H 1.48504 * 109.47064 * 89.99802 * 8 6 4 10 10 H 1.48498 * 109.47468 * 210.00061 * 8 6 4 11 11 H 1.48503 * 109.47422 * 330.00084 * 8 6 4 12 12 C 1.34779 * 119.99477 * 84.86056 * 3 2 1 13 13 O 1.21546 * 119.99560 * 173.95175 * 12 3 2 14 14 C 1.48238 * 120.00185 * 353.94822 * 12 3 2 15 15 C 1.39677 * 120.55594 * 175.19171 * 14 12 3 16 16 C 1.38679 * 118.25438 * 179.97438 * 15 14 12 17 17 C 1.50703 * 120.41709 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.46747 * 299.99979 * 17 16 15 19 19 F 1.39892 * 109.47306 * 60.00192 * 17 16 15 20 20 N 1.32248 * 119.15927 * 0.02562 * 16 15 14 21 21 C 1.31883 * 121.06684 * 0.02562 * 20 16 15 22 22 N 1.31576 * 121.92124 * 359.73365 * 21 20 16 23 23 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47226 * 299.99578 * 1 2 3 25 25 H 1.08996 * 109.47459 * 60.00048 * 1 2 3 26 26 H 1.08999 * 109.47226 * 240.00422 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00336 * 2 1 3 28 28 H 0.97009 * 119.99776 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.87154 * 359.95752 * 15 14 12 30 30 H 1.08994 * 109.46824 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.04396 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3461 1.9902 -1.1789 5 1 2.8436 2.9488 -1.1714 6 6 2.0439 1.3724 -2.3889 7 7 1.0241 0.5497 -2.4690 8 14 3.0894 1.7139 -3.8987 9 1 4.2036 0.7340 -3.9612 10 1 2.2523 1.5901 -5.1189 11 1 3.6439 3.0891 -3.8162 12 6 2.1443 2.0514 1.1626 13 8 2.6517 3.1558 1.1755 14 6 1.6641 1.4415 2.4255 15 6 1.8783 2.0804 3.6490 16 6 1.4083 1.4675 4.8008 17 6 1.6122 2.1141 6.1467 18 9 2.9817 2.2686 6.3871 19 9 0.9919 3.3679 6.1604 20 7 0.7791 0.3084 4.7030 21 6 0.5941 -0.2690 3.5318 22 7 1.0181 0.2771 2.4123 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.8133 0.1193 -3.3125 29 1 2.3964 3.0267 3.6967 30 1 1.1763 1.4842 6.9220 31 1 0.0755 -1.2154 3.4899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334273729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -66.985880 kcal Electronic energy + Delta-G solvation = -20864.154257 eV Core-core repulsion = 17203.628847 eV Total energy + Delta-G solvation = -3660.525411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.15871 -48.15966 -42.33137 -40.18715 -37.24235 -35.46464 -33.81471 -33.37978 -31.24515 -28.74434 -27.72139 -25.59158 -24.54459 -23.89523 -21.65906 -19.55358 -19.03842 -18.73090 -18.41218 -18.02532 -17.17067 -16.72263 -16.56993 -16.28043 -16.07277 -15.78368 -15.30759 -14.98830 -14.70680 -14.52779 -14.52429 -13.97412 -13.80437 -13.19090 -12.89008 -12.74794 -12.54302 -12.25366 -12.19782 -12.09897 -11.97233 -11.33774 -10.98145 -10.86628 -10.84995 -10.18771 -9.84958 -8.54404 -5.95400 -0.66881 -0.36229 1.33459 1.42709 1.53679 1.84800 2.06516 2.17308 2.57153 2.63876 2.98740 3.01726 3.08325 3.29311 3.54754 3.81530 3.85610 3.93942 4.24963 4.48288 4.63778 4.92746 5.04123 5.10762 5.28331 5.29743 5.49336 5.63111 5.89555 5.95040 6.36411 6.79274 6.99585 7.23860 7.87014 8.39133 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.005233 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.781192 B = 5349.811425 C = 5918.337102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.128 3.872 3 N -0.393 5.393 4 C -0.353 4.353 5 H 0.083 0.917 6 C 0.018 3.982 7 N -0.830 5.830 8 Si 0.990 3.010 9 H -0.264 1.264 10 H -0.265 1.265 11 H -0.275 1.275 12 C 0.424 3.576 13 O -0.640 6.640 14 C 0.151 3.849 15 C -0.166 4.166 16 C 0.097 3.903 17 C 0.334 3.666 18 F -0.197 7.197 19 F -0.198 7.198 20 N -0.492 5.492 21 C 0.291 3.709 22 N -0.485 5.485 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.286 0.714 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 -6.226 11.002 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.006 3.994 3 N -0.105 5.105 4 C -0.482 4.482 5 H 0.101 0.899 6 C -0.192 4.192 7 N -0.463 5.463 8 Si 0.812 3.188 9 H -0.189 1.189 10 H -0.190 1.190 11 H -0.200 1.200 12 C 0.215 3.785 13 O -0.531 6.531 14 C 0.005 3.995 15 C -0.190 4.190 16 C -0.052 4.052 17 C 0.280 3.720 18 F -0.179 7.179 19 F -0.179 7.179 20 N -0.207 5.207 21 C 0.005 3.995 22 N -0.202 5.202 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.199 0.801 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.903 -6.706 10.775 13.020 hybrid contribution 0.918 1.344 -0.932 1.875 sum -1.985 -5.362 9.843 11.384 Atomic orbital electron populations 1.21795 0.94611 1.01028 1.00137 1.21763 0.96462 0.80553 1.00659 1.44137 1.48952 1.12547 1.04854 1.19868 1.38338 1.06611 0.83385 0.89923 1.26158 0.95832 0.95797 1.01382 1.70171 1.20638 1.26736 1.28801 0.85009 0.78493 0.79031 0.76277 1.18919 1.18965 1.19998 1.17805 0.90346 0.86514 0.83812 1.90558 1.53426 1.22851 1.86245 1.21678 0.92879 0.90904 0.94054 1.22559 1.01036 1.02673 0.92773 1.22276 0.94579 0.92791 0.95544 1.20454 0.75544 0.81787 0.94212 1.93034 1.33718 1.96118 1.94986 1.93031 1.82394 1.45165 1.97343 1.68020 1.13783 1.08482 1.30388 1.25982 0.92521 0.99861 0.81182 1.69187 1.09557 1.09460 1.32030 0.91768 0.94730 0.92606 0.91412 0.90231 0.90350 0.83845 0.80063 0.73625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.00 71.98 0.65 -4.18 16 2 C 0.13 5.68 4.87 86.38 0.42 6.11 16 3 N -0.39 -20.66 2.62 -638.43 -1.68 -22.34 16 4 C -0.35 -19.63 9.41 84.17 0.79 -18.84 16 5 H 0.08 4.98 7.32 -2.91 -0.02 4.96 16 6 C 0.02 0.86 4.80 85.00 0.41 1.27 16 7 N -0.83 -39.52 8.65 21.70 0.19 -39.33 16 8 Si 0.99 39.11 29.63 68.60 2.03 41.15 16 9 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 10 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 12 C 0.42 22.46 7.58 86.90 0.66 23.11 16 13 O -0.64 -38.25 16.03 -3.86 -0.06 -38.31 16 14 C 0.15 6.40 6.50 41.95 0.27 6.68 16 15 C -0.17 -6.22 9.32 22.72 0.21 -6.01 16 16 C 0.10 2.81 6.31 42.60 0.27 3.08 16 17 C 0.33 7.44 5.58 71.24 0.40 7.84 16 18 F -0.20 -4.97 17.27 44.97 0.78 -4.20 16 19 F -0.20 -5.08 17.27 44.97 0.78 -4.30 16 20 N -0.49 -12.93 10.35 -188.16 -1.95 -14.88 16 21 C 0.29 7.70 12.28 180.92 2.22 9.92 16 22 N -0.48 -17.11 4.11 -189.19 -0.78 -17.89 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.03 1.40 6.11 -2.39 -0.01 1.39 16 25 H 0.06 2.62 6.09 -2.39 -0.01 2.61 16 26 H 0.07 3.16 6.05 -2.39 -0.01 3.15 16 27 H 0.08 3.25 5.77 -2.39 -0.01 3.23 16 28 H 0.29 12.40 8.31 -92.70 -0.77 11.63 16 29 H 0.14 5.66 7.74 -2.91 -0.02 5.63 16 30 H 0.18 2.40 8.12 -2.39 -0.02 2.38 16 31 H 0.25 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -65.77 274.60 6.80 -58.97 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.19 Total: 12.14 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 6.30 Total: 28.98 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -4.21 Total: -94.44 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.06 Total: -38.31 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 1.55 Total: -8.50 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.15 kcal Total: -65.77 6.80 -58.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334273729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.017 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds