Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00506 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 119.99909 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47104 * 90.00095 * 13 11 9 15 15 H 1.48502 * 109.46943 * 210.00235 * 13 11 9 16 16 H 1.48497 * 109.46910 * 330.00035 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 N 1.31072 * 126.66042 * 75.03245 * 17 2 1 19 19 N 1.28839 * 107.99202 * 179.97438 * 18 17 2 20 20 N 1.28731 * 109.39784 * 359.97438 * 19 18 17 21 21 N 1.29020 * 108.81087 * 359.74320 * 20 19 18 22 22 C 1.46497 * 126.44233 * 180.24278 * 21 20 19 23 23 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 26 26 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 27 27 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 28 28 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 29 29 H 0.97002 * 120.00159 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47523 * 270.18282 * 22 21 20 31 31 H 1.09000 * 109.47191 * 30.18554 * 22 21 20 32 32 H 1.08997 * 109.47151 * 150.18296 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.9419 -0.9413 -8.4755 13 14 3.1306 1.6474 -7.9090 14 1 4.3499 2.4619 -7.6749 15 1 2.7142 1.7764 -9.3286 16 1 2.0371 2.1283 -7.0268 17 6 2.0322 -0.7103 1.2305 18 7 2.0370 -2.0041 1.4402 19 7 2.5448 -2.2166 2.6051 20 7 2.8645 -1.0920 3.1438 21 7 2.5694 -0.1397 2.3249 22 6 2.7759 1.2936 2.5464 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 2.2491 -1.6318 -1.1525 27 1 3.6436 -1.1225 -3.4039 28 1 1.9697 -1.5525 -3.8299 29 1 4.0820 -0.5979 -9.3718 30 1 1.8926 1.7187 3.0231 31 1 3.6427 1.4406 3.1907 32 1 2.9461 1.7882 1.5901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336192166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = 81.059161 kcal Electronic energy + Delta-G solvation = -17976.450856 eV Core-core repulsion = 14908.478298 eV Total energy + Delta-G solvation = -3067.972558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.55611 -39.67247 -36.31000 -35.85106 -32.72287 -32.47118 -31.00363 -28.90182 -28.70853 -25.66593 -25.09880 -23.71645 -21.92500 -20.49547 -18.35586 -17.70582 -17.61281 -16.78065 -16.62162 -15.28684 -15.03004 -14.88250 -14.33760 -14.22911 -13.96176 -13.61013 -13.45775 -13.11380 -12.83794 -12.59763 -12.43685 -12.21938 -11.85635 -11.40506 -11.31265 -11.25896 -11.04767 -10.69407 -10.50307 -9.91115 -9.72873 -9.35734 -9.03847 -8.57159 -6.97456 -6.32029 -4.04914 0.80048 1.53185 1.86598 2.62952 2.74381 3.15058 3.29402 3.39996 3.45783 3.54252 3.85766 4.23127 4.28997 4.39990 4.59478 4.69663 4.71686 4.86502 4.98965 5.06884 5.12980 5.31678 5.33605 5.50631 5.67944 5.68898 5.87355 5.95983 6.21100 7.36962 7.90898 8.21940 8.26247 8.39377 9.13608 10.77225 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.003736 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.265885 B = 7493.549846 C = 7751.272982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.233 3.767 3 H 0.112 0.888 4 N -0.727 5.727 5 C 0.539 3.461 6 O -0.517 6.517 7 C -0.124 4.124 8 S -0.139 6.139 9 C -0.523 4.523 10 H 0.089 0.911 11 C 0.096 3.904 12 N -0.879 5.879 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C 0.176 3.824 18 N -0.291 5.291 19 N -0.072 5.072 20 N -0.093 5.093 21 N -0.301 5.301 22 C 0.073 3.927 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.411 0.589 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 4.769 21.107 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.124 3.876 3 H 0.129 0.871 4 N -0.384 5.384 5 C 0.325 3.675 6 O -0.391 6.391 7 C -0.275 4.275 8 S 0.087 5.913 9 C -0.670 4.670 10 H 0.107 0.893 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.681 3.319 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.103 4.103 18 N -0.141 5.141 19 N -0.066 5.066 20 N -0.078 5.078 21 N -0.103 5.103 22 C -0.068 4.068 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.247 0.753 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.855 5.544 21.600 22.822 hybrid contribution 0.390 -0.297 -0.621 0.791 sum -4.466 5.248 20.979 22.081 Atomic orbital electron populations 1.22209 0.92007 1.04019 1.03682 1.19144 0.95303 0.95409 0.77704 0.87055 1.45995 1.69425 1.14769 1.08217 1.20363 0.76461 0.87145 0.83517 1.90702 1.48378 1.15638 1.84370 1.23282 1.04798 1.03663 0.95745 1.84731 1.87445 1.16680 1.02468 1.22311 1.50706 0.98828 0.95201 0.89282 1.24713 0.93342 0.98272 0.94935 1.69937 1.43331 1.35801 1.02483 0.86740 0.81045 0.84825 0.79249 1.19226 1.19899 1.15917 1.26192 0.99890 0.90667 0.93501 1.74980 1.17549 1.11331 1.10258 1.78647 1.11318 1.15308 1.01294 1.78905 1.18854 0.92264 1.17808 1.48418 1.39470 1.10676 1.11761 1.22536 1.05849 0.72332 1.06109 0.90898 0.91511 0.89588 0.75339 0.88250 0.87967 0.91887 0.87974 0.87093 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.47 37.16 0.35 -1.05 16 2 C 0.23 2.27 2.96 -69.08 -0.20 2.07 16 3 H 0.11 0.98 6.29 -51.93 -0.33 0.66 16 4 N -0.73 -8.67 5.07 -54.93 -0.28 -8.95 16 5 C 0.54 8.56 7.81 -10.98 -0.09 8.47 16 6 O -0.52 -9.64 15.53 5.55 0.09 -9.55 16 7 C -0.12 -2.27 6.16 36.01 0.22 -2.04 16 8 S -0.14 -3.37 18.55 -107.50 -1.99 -5.37 16 9 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 10 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 11 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 12 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 13 Si 0.86 21.20 27.74 -169.99 -4.72 16.49 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 17 C 0.18 1.82 6.91 -155.43 -1.07 0.74 16 18 N -0.29 -3.74 12.09 32.70 0.40 -3.35 16 19 N -0.07 -0.99 13.43 60.35 0.81 -0.17 16 20 N -0.09 -1.08 13.29 60.35 0.80 -0.28 16 21 N -0.30 -2.67 3.75 -65.03 -0.24 -2.92 16 22 C 0.07 0.26 11.21 59.85 0.67 0.93 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.41 4.51 8.38 -40.82 -0.34 4.17 16 27 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.27 7.01 -51.93 -0.36 -0.09 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -35.00 299.42 -3.32 -38.32 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.57 Total: -0.69 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 0.09 Total: -2.63 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 2.26 Total: -41.09 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.49 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.00 -3.32 -38.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336192166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.378 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds