Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00506 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 119.99909 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47104 * 90.00095 * 13 11 9 15 15 H 1.48502 * 109.46943 * 210.00235 * 13 11 9 16 16 H 1.48497 * 109.46910 * 330.00035 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 N 1.31072 * 126.66042 * 75.03245 * 17 2 1 19 19 N 1.28839 * 107.99202 * 179.97438 * 18 17 2 20 20 N 1.28731 * 109.39784 * 359.97438 * 19 18 17 21 21 N 1.29020 * 108.81087 * 359.74320 * 20 19 18 22 22 C 1.46497 * 126.44233 * 180.24278 * 21 20 19 23 23 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 26 26 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 27 27 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 28 28 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 29 29 H 0.97002 * 120.00159 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47523 * 270.18282 * 22 21 20 31 31 H 1.09000 * 109.47191 * 30.18554 * 22 21 20 32 32 H 1.08997 * 109.47151 * 150.18296 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.9419 -0.9413 -8.4755 13 14 3.1306 1.6474 -7.9090 14 1 4.3499 2.4619 -7.6749 15 1 2.7142 1.7764 -9.3286 16 1 2.0371 2.1283 -7.0268 17 6 2.0322 -0.7103 1.2305 18 7 2.0370 -2.0041 1.4402 19 7 2.5448 -2.2166 2.6051 20 7 2.8645 -1.0920 3.1438 21 7 2.5694 -0.1397 2.3249 22 6 2.7759 1.2936 2.5464 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 2.2491 -1.6318 -1.1525 27 1 3.6436 -1.1225 -3.4039 28 1 1.9697 -1.5525 -3.8299 29 1 4.0820 -0.5979 -9.3718 30 1 1.8926 1.7187 3.0231 31 1 3.6427 1.4406 3.1907 32 1 2.9461 1.7882 1.5901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336192166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = 53.959858 kcal Electronic energy + Delta-G solvation = -17977.625970 eV Core-core repulsion = 14908.478298 eV Total energy + Delta-G solvation = -3069.147672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.37927 -40.88156 -37.23412 -36.66322 -34.65918 -33.73816 -31.99873 -30.02096 -29.33765 -27.84317 -25.92797 -24.52239 -22.81269 -21.62125 -20.00507 -18.73773 -18.39692 -17.90936 -17.79455 -17.07625 -16.54613 -15.84040 -15.75074 -15.12383 -14.88053 -14.65714 -14.64559 -14.42575 -13.84515 -13.49996 -13.34076 -13.27951 -13.21261 -12.99015 -12.66467 -12.63423 -12.23994 -11.94620 -11.85069 -11.37231 -11.15321 -11.05887 -10.54094 -10.41328 -8.97378 -8.49736 -6.20830 0.01304 0.83688 0.99115 1.04559 1.33997 1.45975 1.49224 1.57642 2.11829 2.26780 2.60765 2.70183 2.88718 3.18601 3.62192 3.79293 3.93229 4.14982 4.16457 4.22975 4.24860 4.48943 4.54364 4.59263 4.66456 4.76086 5.01739 5.16232 5.22411 5.71982 6.13616 6.26291 6.94921 7.01881 7.38853 8.62886 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.003736 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.265885 B = 7493.549846 C = 7751.272982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.236 3.764 3 H 0.128 0.872 4 N -0.712 5.712 5 C 0.550 3.450 6 O -0.544 6.544 7 C -0.117 4.117 8 S -0.161 6.161 9 C -0.533 4.533 10 H 0.059 0.941 11 C 0.044 3.956 12 N -0.920 5.920 13 Si 0.917 3.083 14 H -0.261 1.261 15 H -0.262 1.262 16 H -0.231 1.231 17 C 0.178 3.822 18 N -0.314 5.314 19 N -0.106 5.106 20 N -0.098 5.098 21 N -0.287 5.287 22 C 0.056 3.944 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.417 0.583 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.277 0.723 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 6.560 22.650 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.128 3.872 3 H 0.146 0.854 4 N -0.367 5.367 5 C 0.336 3.664 6 O -0.421 6.421 7 C -0.267 4.267 8 S 0.066 5.934 9 C -0.681 4.681 10 H 0.077 0.923 11 C -0.161 4.161 12 N -0.558 5.558 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.186 1.186 16 H -0.155 1.155 17 C -0.101 4.101 18 N -0.164 5.164 19 N -0.099 5.099 20 N -0.085 5.085 21 N -0.089 5.089 22 C -0.082 4.082 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.254 0.746 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.458 7.323 23.184 24.918 hybrid contribution 0.590 -0.903 -0.945 1.434 sum -4.868 6.421 22.239 23.654 Atomic orbital electron populations 1.22177 0.90936 1.03938 1.04438 1.19350 0.96012 0.95639 0.76211 0.85405 1.45785 1.68092 1.14946 1.07879 1.19765 0.76390 0.86513 0.83730 1.90698 1.49971 1.16585 1.84809 1.23282 1.06198 1.02643 0.94617 1.84525 1.87135 1.18024 1.03715 1.22505 1.50429 0.98328 0.96844 0.92254 1.25618 0.93163 1.02495 0.94854 1.70029 1.44655 1.37905 1.03167 0.85837 0.81126 0.79639 0.79585 1.18602 1.18608 1.15480 1.26104 0.99953 0.90122 0.93925 1.74893 1.18209 1.12929 1.10379 1.78630 1.12875 1.16443 1.01972 1.78828 1.18828 0.92504 1.18311 1.48764 1.37590 1.11955 1.10629 1.23110 1.07945 0.69454 1.07733 0.91429 0.88898 0.90659 0.74637 0.87114 0.86772 0.91396 0.85224 0.85613 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.47 71.98 0.68 -1.64 16 2 C 0.24 3.96 2.96 44.24 0.13 4.09 16 3 H 0.13 1.81 6.29 -2.38 -0.01 1.79 16 4 N -0.71 -15.44 5.07 -446.09 -2.26 -17.70 16 5 C 0.55 16.43 7.81 87.66 0.68 17.11 16 6 O -0.54 -19.18 15.53 -3.04 -0.05 -19.23 16 7 C -0.12 -4.11 6.16 71.24 0.44 -3.67 16 8 S -0.16 -7.65 18.55 -56.49 -1.05 -8.70 16 9 C -0.53 -30.40 10.04 67.95 0.68 -29.72 16 10 H 0.06 3.61 8.03 -2.91 -0.02 3.58 16 11 C 0.04 2.53 5.50 84.86 0.47 3.00 16 12 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 13 Si 0.92 43.54 27.74 68.60 1.90 45.45 16 14 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.23 -10.75 6.74 99.48 0.67 -10.08 16 17 C 0.18 3.27 6.91 138.13 0.95 4.23 16 18 N -0.31 -7.69 12.09 -50.45 -0.61 -8.30 16 19 N -0.11 -2.82 13.43 37.01 0.50 -2.32 16 20 N -0.10 -2.15 13.29 37.02 0.49 -1.65 16 21 N -0.29 -4.36 3.75 -359.66 -1.35 -5.71 16 22 C 0.06 0.21 11.21 127.77 1.43 1.64 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.42 8.37 8.38 -92.71 -0.78 7.59 16 27 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 28 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.66 16 30 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.13 0.13 7.01 -2.39 -0.02 0.11 16 Total: -1.00 -76.16 299.42 3.70 -72.46 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.35 Total: 5.91 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.47 Total: -4.97 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.93 Total: -90.93 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.45 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.05 Total: -8.70 kcal Total: -76.16 3.70 -72.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336192166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.423 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds