Wall clock time and date at job start Mon Mar 30 2020 01:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47014 * 239.99694 * 2 1 3 5 5 H 1.08003 * 120.00486 * 240.00031 * 4 2 1 6 6 C 1.37879 * 119.99789 * 60.00061 * 4 2 1 7 7 N 1.31516 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99978 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47044 * 60.00498 * 8 6 4 10 10 H 1.48507 * 109.47083 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47193 * 300.00142 * 8 6 4 12 12 N 1.46502 * 109.47054 * 120.00101 * 2 1 3 13 13 C 1.46496 * 119.99924 * 59.99720 * 12 2 1 14 14 C 1.34773 * 119.99685 * 239.99892 * 12 2 1 15 15 O 1.21609 * 120.00254 * 4.54655 * 14 12 2 16 16 C 1.47382 * 119.99890 * 184.55212 * 14 12 2 17 17 C 1.38066 * 126.42520 * 322.82350 * 16 14 12 18 18 N 1.34236 * 107.44049 * 180.16863 * 17 16 14 19 19 C 1.46506 * 125.73644 * 179.90225 * 18 17 16 20 20 N 1.39928 * 108.52328 * 359.64371 * 18 17 16 21 21 C 1.30534 * 108.89498 * 0.22430 * 20 18 17 22 22 Cl 1.73603 * 126.00638 * 180.02562 * 21 20 18 23 23 H 1.08996 * 109.47238 * 60.00353 * 1 2 3 24 24 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46743 * 300.00141 * 1 2 3 26 26 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47282 * 264.79947 * 13 12 2 28 28 H 1.09001 * 109.47689 * 24.80697 * 13 12 2 29 29 H 1.09004 * 109.46930 * 144.80394 * 13 12 2 30 30 H 1.08002 * 126.28059 * 0.06072 * 17 16 14 31 31 H 1.09000 * 109.46924 * 269.71697 * 19 18 17 32 32 H 1.09001 * 109.47149 * 29.72112 * 19 18 17 33 33 H 1.08998 * 109.46546 * 149.72227 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2205 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0190 1.1500 1.9345 16 6 3.3670 -0.7563 3.2338 17 6 2.7539 -1.7546 3.9644 18 7 3.6131 -2.1378 4.9219 19 6 3.3674 -3.1753 5.9267 20 7 4.7851 -1.3839 4.7953 21 6 4.6502 -0.5580 3.7935 22 17 5.8379 0.5829 3.2444 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7086 1.1612 -3.4844 27 1 0.7898 -2.1448 2.0765 28 1 1.4394 -2.5734 0.4757 29 1 2.5006 -2.6050 1.9044 30 1 1.7639 -2.1527 3.7974 31 1 2.9194 -2.7246 6.8123 32 1 2.6892 -3.9241 5.5175 33 1 4.3108 -3.6491 6.1979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:03 Heat of formation + Delta-G solvation = 48.506914 kcal Electronic energy + Delta-G solvation = -18833.494330 eV Core-core repulsion = 15729.773743 eV Total energy + Delta-G solvation = -3103.720587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40338 -38.57670 -36.57515 -35.22784 -33.29172 -32.87945 -30.77256 -28.91758 -27.09584 -26.13778 -25.18407 -22.84197 -21.29597 -20.57406 -18.81332 -16.90854 -16.48353 -16.13621 -15.63424 -15.28400 -14.92776 -14.32480 -14.16807 -13.64412 -13.29623 -13.20281 -12.75789 -12.43874 -12.10032 -11.76413 -11.55648 -11.51771 -11.29475 -11.02140 -10.83479 -10.68131 -10.57480 -10.23053 -10.14210 -9.35815 -9.17464 -8.99789 -8.58002 -8.38798 -7.54350 -6.04160 -4.12007 1.51295 1.53498 2.19047 2.73370 3.29973 3.35367 3.37174 3.70479 4.10773 4.38962 4.42901 4.60683 4.84689 5.09672 5.18591 5.26873 5.39713 5.47119 5.72950 5.91940 6.00128 6.34731 6.64952 6.78947 6.87034 7.09753 7.30714 7.48016 7.58321 7.75025 8.06003 8.23313 8.56850 8.87065 9.12617 9.54430 11.01082 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.005554 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.584889 B = 5040.261677 C = 5461.612991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.587 5.587 13 C 0.080 3.920 14 C 0.578 3.422 15 O -0.537 6.537 16 C -0.254 4.254 17 C 0.097 3.903 18 N -0.357 5.357 19 C 0.100 3.900 20 N -0.291 5.291 21 C 0.167 3.833 22 Cl 0.026 6.974 23 H 0.093 0.907 24 H 0.028 0.972 25 H 0.011 0.989 26 H 0.264 0.736 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.193 0.807 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -9.519 14.691 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.064 4.064 14 C 0.364 3.636 15 O -0.415 6.415 16 C -0.270 4.270 17 C -0.052 4.052 18 N -0.139 5.139 19 C -0.041 4.041 20 N -0.116 5.116 21 C -0.025 4.025 22 Cl 0.053 6.947 23 H 0.112 0.888 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.210 0.790 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.680 -9.175 15.410 18.133 hybrid contribution -0.161 -0.328 -1.462 1.507 sum 2.520 -9.502 13.948 17.064 Atomic orbital electron populations 1.22084 0.98173 0.99295 1.00844 1.18953 0.90863 0.94603 0.79598 0.91701 1.21290 1.31822 1.13060 0.90287 0.92297 1.24878 0.94944 0.94979 0.98891 1.69870 1.36281 1.22556 1.23829 0.86569 0.79304 0.79514 0.82065 1.20303 1.21190 1.20227 1.48080 1.48978 1.11365 1.23382 1.21767 0.98155 0.83897 1.02560 1.17127 0.79105 0.86266 0.81145 1.90754 1.60581 1.14675 1.75509 1.20486 0.95986 1.05328 1.05176 1.23343 0.97134 0.95320 0.89444 1.48115 1.10604 1.29952 1.25228 1.22007 1.03891 0.88161 0.90032 1.77129 1.05032 1.09361 1.20127 1.22619 0.91448 0.94263 0.94218 1.98418 1.54231 1.54907 1.87104 0.88842 0.95250 0.96961 0.92647 0.94205 0.89801 0.92827 0.78999 0.90196 0.88757 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 3 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.53 -14.14 7.96 -34.44 -0.27 -14.42 16 5 H 0.06 1.56 7.42 -52.48 -0.39 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -12.59 2.75 -176.55 -0.49 -13.07 16 13 C 0.08 1.30 7.97 59.84 0.48 1.78 16 14 C 0.58 12.60 7.51 -12.54 -0.09 12.51 16 15 O -0.54 -13.74 15.93 5.27 0.08 -13.65 16 16 C -0.25 -4.49 5.39 -105.04 -0.57 -5.06 16 17 C 0.10 1.24 9.21 -16.56 -0.15 1.09 16 18 N -0.36 -4.25 3.98 -67.59 -0.27 -4.52 16 19 C 0.10 0.60 11.44 59.85 0.68 1.28 16 20 N -0.29 -4.51 12.50 33.18 0.41 -4.09 16 21 C 0.17 2.93 7.87 -16.90 -0.13 2.79 16 22 Cl 0.03 0.45 28.74 -51.86 -1.49 -1.05 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 24 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 28 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 29 H 0.05 0.75 5.88 -51.93 -0.31 0.45 16 30 H 0.19 1.78 6.24 -52.49 -0.33 1.45 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -33.58 295.82 -5.35 -38.93 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.67 Total: -3.59 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 0.00 Total: 5.00 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.29 Total: -46.08 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.49 Total: -1.05 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.58 -5.35 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.434 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds