Wall clock time and date at job start Mon Mar 30 2020 01:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47014 * 239.99694 * 2 1 3 5 5 H 1.08003 * 120.00486 * 240.00031 * 4 2 1 6 6 C 1.37879 * 119.99789 * 60.00061 * 4 2 1 7 7 N 1.31516 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99978 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47044 * 60.00498 * 8 6 4 10 10 H 1.48507 * 109.47083 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47193 * 300.00142 * 8 6 4 12 12 N 1.46502 * 109.47054 * 120.00101 * 2 1 3 13 13 C 1.46496 * 119.99924 * 59.99720 * 12 2 1 14 14 C 1.34773 * 119.99685 * 239.99892 * 12 2 1 15 15 O 1.21609 * 120.00254 * 4.54655 * 14 12 2 16 16 C 1.47382 * 119.99890 * 184.55212 * 14 12 2 17 17 C 1.38066 * 126.42520 * 322.82350 * 16 14 12 18 18 N 1.34236 * 107.44049 * 180.16863 * 17 16 14 19 19 C 1.46506 * 125.73644 * 179.90225 * 18 17 16 20 20 N 1.39928 * 108.52328 * 359.64371 * 18 17 16 21 21 C 1.30534 * 108.89498 * 0.22430 * 20 18 17 22 22 Cl 1.73603 * 126.00638 * 180.02562 * 21 20 18 23 23 H 1.08996 * 109.47238 * 60.00353 * 1 2 3 24 24 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46743 * 300.00141 * 1 2 3 26 26 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47282 * 264.79947 * 13 12 2 28 28 H 1.09001 * 109.47689 * 24.80697 * 13 12 2 29 29 H 1.09004 * 109.46930 * 144.80394 * 13 12 2 30 30 H 1.08002 * 126.28059 * 0.06072 * 17 16 14 31 31 H 1.09000 * 109.46924 * 269.71697 * 19 18 17 32 32 H 1.09001 * 109.47149 * 29.72112 * 19 18 17 33 33 H 1.08998 * 109.46546 * 149.72227 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2205 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0190 1.1500 1.9345 16 6 3.3670 -0.7563 3.2338 17 6 2.7539 -1.7546 3.9644 18 7 3.6131 -2.1378 4.9219 19 6 3.3674 -3.1753 5.9267 20 7 4.7851 -1.3839 4.7953 21 6 4.6502 -0.5580 3.7935 22 17 5.8379 0.5829 3.2444 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7086 1.1612 -3.4844 27 1 0.7898 -2.1448 2.0765 28 1 1.4394 -2.5734 0.4757 29 1 2.5006 -2.6050 1.9044 30 1 1.7639 -2.1527 3.7974 31 1 2.9194 -2.7246 6.8123 32 1 2.6892 -3.9241 5.5175 33 1 4.3108 -3.6491 6.1979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338414980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:03 Heat of formation + Delta-G solvation = 24.841979 kcal Electronic energy + Delta-G solvation = -18834.520519 eV Core-core repulsion = 15729.773743 eV Total energy + Delta-G solvation = -3104.746776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54426 -40.20734 -37.85735 -37.01637 -34.82821 -34.17165 -32.28724 -30.51113 -28.04569 -27.46317 -27.23869 -24.32572 -22.45102 -22.01559 -20.33859 -18.47437 -18.09071 -17.60585 -16.94773 -16.75723 -16.20295 -15.86565 -15.73392 -14.85044 -14.72595 -14.18266 -14.15421 -13.67020 -13.49718 -13.47124 -13.05285 -12.86389 -12.73308 -12.61092 -12.59249 -12.48782 -12.13749 -12.08657 -11.83243 -11.15027 -10.73390 -10.47764 -10.42937 -9.78073 -9.23717 -8.10161 -6.26262 0.38935 0.48071 0.85346 1.43706 1.46628 1.53509 1.75294 2.14686 2.44062 2.61615 3.17836 3.43108 3.76619 4.08496 4.25684 4.47314 4.48740 4.49633 4.75077 4.76158 4.77122 4.88099 4.98504 5.07540 5.14031 5.53919 5.67614 5.72976 5.78454 6.11369 6.19715 6.22047 6.81442 6.89058 7.37058 7.54731 8.93867 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.005554 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.584889 B = 5040.261677 C = 5461.612991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.573 3.427 15 O -0.593 6.593 16 C -0.296 4.296 17 C 0.133 3.867 18 N -0.339 5.339 19 C 0.084 3.916 20 N -0.303 5.303 21 C 0.147 3.853 22 Cl 0.007 6.993 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.021 0.979 26 H 0.264 0.736 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.238 0.762 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -13.005 16.176 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.361 3.639 15 O -0.475 6.475 16 C -0.311 4.311 17 C -0.019 4.019 18 N -0.119 5.119 19 C -0.054 4.054 20 N -0.129 5.129 21 C -0.044 4.044 22 Cl 0.035 6.965 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.254 0.746 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.741 -12.730 16.946 21.266 hybrid contribution 0.112 0.670 -1.775 1.900 sum 1.852 -12.061 15.171 19.469 Atomic orbital electron populations 1.21852 0.96737 1.00309 0.99934 1.18545 0.91871 0.92148 0.81274 0.97449 1.21545 1.31800 1.13075 0.91127 0.92185 1.25696 0.95103 0.95638 1.01877 1.70019 1.37292 1.23838 1.24394 0.85558 0.78254 0.79142 0.78333 1.18478 1.20979 1.20637 1.48035 1.48940 1.13336 1.21991 1.22081 1.00824 0.80663 1.03211 1.17684 0.78365 0.85864 0.81991 1.90709 1.62374 1.17301 1.77139 1.20159 0.96980 1.08249 1.05749 1.23795 0.97894 0.92671 0.87513 1.48658 1.08942 1.29222 1.25089 1.22640 1.05529 0.87558 0.89662 1.77088 1.07053 1.09495 1.19308 1.22685 0.91488 0.94992 0.95243 1.98397 1.54896 1.55800 1.87449 0.91582 0.93037 0.96005 0.92699 0.90000 0.90932 0.90317 0.74639 0.88172 0.84737 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.97 71.98 0.65 -5.50 16 2 C 0.26 13.77 2.63 44.25 0.12 13.88 16 3 H 0.01 0.48 6.91 -2.39 -0.02 0.46 16 4 C -0.54 -29.20 7.96 25.60 0.20 -29.00 16 5 H 0.06 3.17 7.42 -2.91 -0.02 3.15 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.59 -25.17 2.75 -830.74 -2.29 -27.46 16 13 C 0.07 2.16 7.97 127.77 1.02 3.17 16 14 C 0.57 25.30 7.51 86.65 0.65 25.95 16 15 O -0.59 -32.03 15.93 -4.06 -0.06 -32.09 16 16 C -0.30 -10.09 5.39 -20.13 -0.11 -10.19 16 17 C 0.13 2.86 9.21 84.28 0.78 3.64 16 18 N -0.34 -6.63 3.98 -367.76 -1.46 -8.09 16 19 C 0.08 0.55 11.44 127.77 1.46 2.01 16 20 N -0.30 -8.81 12.50 -48.94 -0.61 -9.42 16 21 C 0.15 5.11 7.87 85.66 0.67 5.78 16 22 Cl 0.01 0.25 28.74 -2.72 -0.08 0.17 16 23 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 24 H 0.05 2.15 7.67 -2.38 -0.02 2.13 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.08 1.70 7.32 -2.39 -0.02 1.68 16 28 H 0.07 2.30 7.10 -2.39 -0.02 2.29 16 29 H 0.08 1.88 5.88 -2.38 -0.01 1.87 16 30 H 0.24 2.81 6.24 -2.91 -0.02 2.79 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -78.82 295.82 4.79 -74.04 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.14 Total: -0.67 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.89 Total: 11.10 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.12 Total: -97.72 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.06 Total: -32.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -78.82 4.79 -74.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.877 kcal (2) G-P(sol) polarization free energy of solvation -78.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds