Wall clock time and date at job start Mon Mar 30 2020 00:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00273 * 2 1 4 4 H 1.48502 * 109.47169 * 273.36573 * 3 2 1 5 5 H 1.48506 * 109.46962 * 33.36541 * 3 2 1 6 6 H 1.48501 * 109.47382 * 153.36608 * 3 2 1 7 7 C 1.37876 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99606 * 350.00603 * 7 2 1 9 9 C 1.50693 * 120.00429 * 170.00324 * 7 2 1 10 10 C 1.52992 * 113.00316 * 84.44817 * 9 7 2 11 11 O 1.45199 * 109.47079 * 65.17097 * 10 9 7 12 12 C 1.34235 * 117.00139 * 184.56676 * 11 10 9 13 13 O 1.20823 * 119.99595 * 355.11497 * 12 11 10 14 14 C 1.50696 * 120.00253 * 175.40047 * 12 11 10 15 15 H 1.08999 * 110.50535 * 39.22810 * 14 12 11 16 16 C 1.54089 * 110.56229 * 276.49375 * 14 12 11 17 17 O 1.45700 * 104.00999 * 241.42561 * 16 14 12 18 18 C 1.33770 * 109.47447 * 359.97438 * 17 16 14 19 19 O 1.21510 * 123.07268 * 180.02562 * 18 17 16 20 20 N 1.34324 * 113.90424 * 359.91718 * 18 17 16 21 21 C 1.54038 * 113.82028 * 216.27758 * 9 7 2 22 22 O 1.44446 * 85.42880 * 91.80505 * 21 9 7 23 23 C 1.44173 * 93.37855 * 24.09059 * 22 21 9 24 24 H 0.97006 * 119.99965 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47193 * 305.17050 * 10 9 7 26 26 H 1.09004 * 109.47844 * 185.17030 * 10 9 7 27 27 H 1.09000 * 110.52266 * 0.05443 * 16 14 12 28 28 H 1.09003 * 110.52344 * 122.79552 * 16 14 12 29 29 H 0.96995 * 125.73750 * 180.12163 * 20 18 17 30 30 H 1.08993 * 113.86685 * 205.91864 * 21 9 7 31 31 H 1.09008 * 113.86040 * 337.61814 * 21 9 7 32 32 H 1.09002 * 113.86734 * 221.76937 * 23 22 21 33 33 H 1.08999 * 113.86721 * 90.05728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4255 2.0875 -1.3977 5 1 1.4840 2.6311 0.7700 6 1 3.5805 1.4206 0.6276 7 6 2.0045 -1.1940 -0.0005 8 1 1.4767 -2.1223 0.1614 9 6 3.4943 -1.2039 -0.2271 10 6 4.2952 -0.9510 1.0517 11 8 4.0850 -2.0482 1.9793 12 6 4.6453 -1.9352 3.1939 13 8 5.3623 -0.9952 3.4433 14 6 4.3853 -2.9840 4.2442 15 1 4.3727 -3.9778 3.7966 16 6 3.0575 -2.7021 4.9735 17 8 3.4533 -2.4985 6.3608 18 6 4.7800 -2.6306 6.4700 19 8 5.3739 -2.5100 7.5232 20 7 5.3964 -2.9109 5.3100 21 6 3.9914 -2.4117 -1.0437 22 8 3.8168 -1.5579 -2.1956 23 6 3.9471 -0.3469 -1.4243 24 1 -0.4850 0.8401 0.0004 25 1 3.9635 -0.0193 1.5099 26 1 5.3553 -0.8790 0.8084 27 1 2.5859 -1.8038 4.5750 28 1 2.3862 -3.5568 4.8892 29 1 6.3501 -3.0430 5.1927 30 1 5.0293 -2.6801 -0.8468 31 1 3.3163 -3.2673 -1.0209 32 1 3.2370 0.4319 -1.7027 33 1 4.9715 0.0168 -1.3439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344155132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:16 Heat of formation + Delta-G solvation = -146.397164 kcal Electronic energy + Delta-G solvation = -21362.435551 eV Core-core repulsion = 17777.261373 eV Total energy + Delta-G solvation = -3585.174178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97465 -40.23557 -39.45873 -37.33582 -36.34074 -34.89649 -33.01304 -31.03741 -30.06742 -26.19254 -25.91400 -24.88878 -24.15945 -22.61634 -21.12840 -19.27293 -18.42420 -18.16196 -17.28613 -17.02309 -16.45149 -16.25501 -15.80023 -15.64059 -14.97083 -14.69384 -14.56741 -14.43529 -13.91391 -13.84017 -13.34607 -13.02788 -12.66152 -12.52163 -12.16150 -11.19486 -11.12988 -10.92713 -10.79462 -10.73405 -10.59606 -10.37517 -10.19978 -9.70179 -9.58080 -9.41258 -8.82514 -8.73354 -6.36705 -4.36559 2.03460 2.16992 2.50943 2.76327 3.01963 3.08576 3.18275 3.36424 3.78079 4.11159 4.39630 4.43212 4.47255 4.84666 4.96946 5.05059 5.21360 5.36854 5.53903 5.74924 5.80106 5.86077 5.97146 6.23786 6.46510 6.48090 6.66793 6.83362 6.86959 6.95549 7.39427 7.75127 7.86285 8.20799 8.68034 9.22890 10.75191 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.005590 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.880539 B = 5007.585633 C = 5433.479473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.859 3.141 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.087 0.913 9 C -0.005 4.005 10 C 0.067 3.933 11 O -0.323 6.323 12 C 0.442 3.558 13 O -0.500 6.500 14 C 0.105 3.895 15 H 0.141 0.859 16 C 0.057 3.943 17 O -0.321 6.321 18 C 0.653 3.347 19 O -0.518 6.518 20 N -0.714 5.714 21 C 0.044 3.956 22 O -0.370 6.370 23 C 0.024 3.976 24 H 0.269 0.731 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.440 0.560 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -6.326 4.714 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.105 0.895 9 C -0.006 4.006 10 C -0.007 4.007 11 O -0.237 6.237 12 C 0.282 3.718 13 O -0.388 6.388 14 C -0.003 4.003 15 H 0.159 0.841 16 C -0.018 4.018 17 O -0.231 6.231 18 C 0.406 3.594 19 O -0.403 6.403 20 N -0.388 5.388 21 C -0.033 4.033 22 O -0.289 6.289 23 C -0.053 4.053 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.284 0.716 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.621 -5.823 5.225 10.921 hybrid contribution 0.983 1.194 -0.221 1.562 sum 8.604 -4.629 5.004 10.977 Atomic orbital electron populations 1.69870 1.06124 1.27408 1.48148 1.24948 0.94704 0.98737 0.94094 0.87404 0.80946 0.84467 0.78409 1.19836 1.21233 1.18066 1.20332 0.87038 0.95518 1.50214 0.89472 1.21655 0.98051 0.92780 0.88147 1.24178 0.98733 0.87664 0.90083 1.86509 1.68202 1.47014 1.21992 1.23508 0.78275 0.86218 0.83790 1.90695 1.35203 1.32460 1.80407 1.21833 0.89940 1.00357 0.88206 0.84106 1.24327 0.94286 1.06752 0.76464 1.87318 1.21695 1.84676 1.29404 1.18490 0.80771 0.75677 0.84502 1.91082 1.64930 1.55537 1.28712 1.45804 1.10994 1.75585 1.06383 1.23952 0.98479 0.95907 0.84949 1.89622 1.93182 1.16903 1.29177 1.24245 0.99006 0.90521 0.91553 0.92108 0.90656 0.93164 0.86343 0.85155 0.71582 0.92320 0.89298 0.89422 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 13.96 55.43 0.77 -23.78 16 2 C 0.08 2.06 5.38 -17.82 -0.10 1.97 16 3 Si 0.86 19.31 23.74 -169.99 -4.04 15.27 16 4 H -0.27 -5.98 6.64 56.52 0.38 -5.60 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -5.32 5.01 56.52 0.28 -5.04 16 7 C -0.49 -12.27 8.84 -34.44 -0.30 -12.58 16 8 H 0.09 2.35 8.06 -52.48 -0.42 1.92 16 9 C -0.01 -0.11 0.45 -154.58 -0.07 -0.17 16 10 C 0.07 1.26 4.35 37.15 0.16 1.42 16 11 O -0.32 -5.35 10.03 -39.27 -0.39 -5.74 16 12 C 0.44 6.43 7.06 36.00 0.25 6.69 16 13 O -0.50 -8.82 16.33 -18.75 -0.31 -9.13 16 14 C 0.10 1.05 4.27 -68.19 -0.29 0.76 16 15 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.06 0.56 7.87 37.73 0.30 0.85 16 17 O -0.32 -4.22 11.09 -37.83 -0.42 -4.64 16 18 C 0.65 9.22 9.16 53.85 0.49 9.72 16 19 O -0.52 -9.12 18.04 -19.12 -0.34 -9.46 16 20 N -0.71 -7.79 5.68 -59.28 -0.34 -8.13 16 21 C 0.04 0.82 8.30 37.64 0.31 1.13 16 22 O -0.37 -7.90 12.41 -35.23 -0.44 -8.33 16 23 C 0.02 0.48 6.77 37.64 0.26 0.74 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.08 1.54 5.37 -51.93 -0.28 1.27 16 26 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.12 1.27 7.72 -51.93 -0.40 0.87 16 28 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.44 4.01 8.96 -40.82 -0.37 3.64 16 30 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 1.61 8.09 -51.92 -0.42 1.19 16 32 H 0.09 1.91 4.25 -51.93 -0.22 1.69 16 33 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -32.50 283.78 -3.70 -36.20 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.49 Total: 2.95 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 1.01 Total: 10.52 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.44 Total: -31.91 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.90 Total: -37.31 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.04 Total: 15.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.50 -3.70 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.195 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds