Wall clock time and date at job start Mon Mar 30 2020 00:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00273 * 2 1 4 4 H 1.48502 * 109.47169 * 273.36573 * 3 2 1 5 5 H 1.48506 * 109.46962 * 33.36541 * 3 2 1 6 6 H 1.48501 * 109.47382 * 153.36608 * 3 2 1 7 7 C 1.37876 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99606 * 350.00603 * 7 2 1 9 9 C 1.50693 * 120.00429 * 170.00324 * 7 2 1 10 10 C 1.52992 * 113.00316 * 84.44817 * 9 7 2 11 11 O 1.45199 * 109.47079 * 65.17097 * 10 9 7 12 12 C 1.34235 * 117.00139 * 184.56676 * 11 10 9 13 13 O 1.20823 * 119.99595 * 355.11497 * 12 11 10 14 14 C 1.50696 * 120.00253 * 175.40047 * 12 11 10 15 15 H 1.08999 * 110.50535 * 39.22810 * 14 12 11 16 16 C 1.54089 * 110.56229 * 276.49375 * 14 12 11 17 17 O 1.45700 * 104.00999 * 241.42561 * 16 14 12 18 18 C 1.33770 * 109.47447 * 359.97438 * 17 16 14 19 19 O 1.21510 * 123.07268 * 180.02562 * 18 17 16 20 20 N 1.34324 * 113.90424 * 359.91718 * 18 17 16 21 21 C 1.54038 * 113.82028 * 216.27758 * 9 7 2 22 22 O 1.44446 * 85.42880 * 91.80505 * 21 9 7 23 23 C 1.44173 * 93.37855 * 24.09059 * 22 21 9 24 24 H 0.97006 * 119.99965 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47193 * 305.17050 * 10 9 7 26 26 H 1.09004 * 109.47844 * 185.17030 * 10 9 7 27 27 H 1.09000 * 110.52266 * 0.05443 * 16 14 12 28 28 H 1.09003 * 110.52344 * 122.79552 * 16 14 12 29 29 H 0.96995 * 125.73750 * 180.12163 * 20 18 17 30 30 H 1.08993 * 113.86685 * 205.91864 * 21 9 7 31 31 H 1.09008 * 113.86040 * 337.61814 * 21 9 7 32 32 H 1.09002 * 113.86734 * 221.76937 * 23 22 21 33 33 H 1.08999 * 113.86721 * 90.05728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4255 2.0875 -1.3977 5 1 1.4840 2.6311 0.7700 6 1 3.5805 1.4206 0.6276 7 6 2.0045 -1.1940 -0.0005 8 1 1.4767 -2.1223 0.1614 9 6 3.4943 -1.2039 -0.2271 10 6 4.2952 -0.9510 1.0517 11 8 4.0850 -2.0482 1.9793 12 6 4.6453 -1.9352 3.1939 13 8 5.3623 -0.9952 3.4433 14 6 4.3853 -2.9840 4.2442 15 1 4.3727 -3.9778 3.7966 16 6 3.0575 -2.7021 4.9735 17 8 3.4533 -2.4985 6.3608 18 6 4.7800 -2.6306 6.4700 19 8 5.3739 -2.5100 7.5232 20 7 5.3964 -2.9109 5.3100 21 6 3.9914 -2.4117 -1.0437 22 8 3.8168 -1.5579 -2.1956 23 6 3.9471 -0.3469 -1.4243 24 1 -0.4850 0.8401 0.0004 25 1 3.9635 -0.0193 1.5099 26 1 5.3553 -0.8790 0.8084 27 1 2.5859 -1.8038 4.5750 28 1 2.3862 -3.5568 4.8892 29 1 6.3501 -3.0430 5.1927 30 1 5.0293 -2.6801 -0.8468 31 1 3.3163 -3.2673 -1.0209 32 1 3.2370 0.4319 -1.7027 33 1 4.9715 0.0168 -1.3439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344155132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:16 Heat of formation + Delta-G solvation = -173.739449 kcal Electronic energy + Delta-G solvation = -21363.621201 eV Core-core repulsion = 17777.261373 eV Total energy + Delta-G solvation = -3586.359828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.98521 -41.62560 -40.86914 -38.48060 -37.62487 -35.89106 -34.89050 -32.62243 -31.11071 -27.68913 -27.38249 -26.45556 -25.42376 -23.62572 -22.27835 -20.95566 -19.39963 -19.27616 -18.64269 -18.18629 -17.98720 -17.74550 -17.16707 -16.95790 -16.37842 -16.11200 -15.74369 -15.60970 -15.35589 -14.88637 -14.86529 -14.54711 -14.01734 -13.73525 -13.56695 -12.83587 -12.43151 -12.32955 -12.26695 -12.11573 -12.03706 -11.83402 -11.68880 -11.31472 -11.07735 -10.70378 -10.58561 -10.38604 -8.35267 -6.37381 0.89850 1.09014 1.23823 1.30076 1.37219 1.52645 1.69902 2.24344 2.45980 2.78628 2.93204 3.13670 3.27045 3.67543 3.80729 3.99320 4.07045 4.25777 4.29589 4.36908 4.42673 4.46601 4.54031 4.64014 4.98738 5.26916 5.36412 5.42389 5.58951 5.59075 5.97074 6.23053 6.56016 6.67363 6.83421 7.25263 8.80021 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.005590 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.880539 B = 5007.585633 C = 5433.479473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.227 1.227 7 C -0.487 4.487 8 H 0.053 0.947 9 C -0.018 4.018 10 C 0.073 3.927 11 O -0.327 6.327 12 C 0.444 3.556 13 O -0.532 6.532 14 C 0.116 3.884 15 H 0.193 0.807 16 C 0.052 3.948 17 O -0.335 6.335 18 C 0.651 3.349 19 O -0.562 6.562 20 N -0.699 5.699 21 C 0.054 3.946 22 O -0.395 6.395 23 C 0.023 3.977 24 H 0.267 0.733 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.174 0.826 29 H 0.449 0.551 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 -7.212 4.492 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.150 1.150 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.019 4.019 10 C -0.001 4.001 11 O -0.241 6.241 12 C 0.286 3.714 13 O -0.421 6.421 14 C 0.009 3.991 15 H 0.210 0.790 16 C -0.022 4.022 17 O -0.244 6.244 18 C 0.404 3.596 19 O -0.449 6.449 20 N -0.373 5.373 21 C -0.023 4.023 22 O -0.314 6.314 23 C -0.054 4.054 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.191 0.809 29 H 0.295 0.705 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.681 -6.735 4.976 12.800 hybrid contribution 0.310 1.372 -0.174 1.418 sum 9.991 -5.362 4.801 12.314 Atomic orbital electron populations 1.70009 1.07938 1.28025 1.51105 1.25661 0.95219 1.02143 0.94254 0.86611 0.81019 0.80305 0.78783 1.19045 1.22444 1.14999 1.20507 0.89565 0.93919 1.48455 0.92903 1.21583 0.95618 0.94917 0.89765 1.23815 0.99552 0.87451 0.89321 1.86507 1.68692 1.46100 1.22776 1.24335 0.76997 0.86569 0.83521 1.90693 1.36689 1.34054 1.80712 1.22153 0.89366 1.01007 0.86620 0.79000 1.24683 0.94683 1.08092 0.74705 1.87299 1.21233 1.84556 1.31321 1.18605 0.81004 0.75315 0.84654 1.91045 1.65916 1.57487 1.30458 1.45753 1.11686 1.74207 1.05622 1.24100 1.00660 0.94704 0.82788 1.89600 1.93621 1.17774 1.30444 1.24359 1.00694 0.89856 0.90495 0.92407 0.92643 0.90509 0.87602 0.80872 0.70522 0.88231 0.89592 0.91347 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.96 21.45 0.30 -53.42 16 2 C 0.03 1.39 5.38 84.66 0.46 1.84 16 3 Si 0.91 39.49 23.74 68.60 1.63 41.11 16 4 H -0.26 -11.11 6.64 99.48 0.66 -10.45 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.23 -8.72 5.01 99.48 0.50 -8.22 16 7 C -0.49 -24.23 8.84 25.60 0.23 -24.01 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 9 C -0.02 -0.69 0.45 -52.23 -0.02 -0.72 16 10 C 0.07 2.51 4.35 71.98 0.31 2.82 16 11 O -0.33 -9.82 10.03 -51.46 -0.52 -10.34 16 12 C 0.44 11.60 7.06 71.23 0.50 12.10 16 13 O -0.53 -17.53 16.33 21.97 0.36 -17.17 16 14 C 0.12 1.90 4.27 44.50 0.19 2.09 16 15 H 0.19 1.33 8.14 -2.39 -0.02 1.31 16 16 C 0.05 0.88 7.87 72.35 0.57 1.45 16 17 O -0.33 -8.26 11.09 -47.30 -0.52 -8.78 16 18 C 0.65 17.50 9.16 129.86 1.19 18.69 16 19 O -0.56 -19.59 18.04 19.65 0.35 -19.23 16 20 N -0.70 -13.44 5.68 -572.82 -3.25 -16.69 16 21 C 0.05 1.83 8.30 72.30 0.60 2.43 16 22 O -0.40 -15.92 12.41 -148.98 -1.85 -17.77 16 23 C 0.02 0.85 6.77 72.30 0.49 1.34 16 24 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 25 H 0.06 2.13 5.37 -2.39 -0.01 2.12 16 26 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 27 H 0.11 2.10 7.72 -2.39 -0.02 2.08 16 28 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.45 7.02 8.96 -92.71 -0.83 6.19 16 30 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 31 H 0.09 2.94 8.09 -2.38 -0.02 2.92 16 32 H 0.07 2.85 4.25 -2.39 -0.01 2.84 16 33 H 0.10 3.01 8.05 -2.39 -0.02 2.99 16 Total: -1.00 -73.25 283.78 1.10 -72.16 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.08 Total: 12.09 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 4.51 Total: 18.04 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -2.95 Total: -70.10 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -2.18 Total: -73.29 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.63 Total: 41.11 kcal Total: -73.25 1.10 -72.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344155132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.583 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds