Wall clock time and date at job start Mon Mar 30 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28712 * 125.86856 * 2 1 4 4 N 1.28639 * 110.17960 * 180.24109 * 3 2 1 5 5 C 1.33777 * 108.88287 * 359.76079 * 4 3 2 6 6 C 1.35319 * 125.87002 * 179.83578 * 2 1 3 7 7 C 1.50703 * 126.90821 * 0.03085 * 6 2 1 8 8 C 1.52998 * 109.47221 * 264.71350 * 7 6 2 9 9 O 1.45196 * 109.47070 * 180.02562 * 8 7 6 10 10 C 1.34234 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00068 * 179.97438 * 10 9 8 13 13 S 1.80996 * 109.47240 * 180.02562 * 12 10 9 14 14 C 1.76200 * 100.00090 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00048 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99898 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47255 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46667 * 120.00384 * 18 16 14 21 21 H 1.48500 * 109.47120 * 239.99937 * 18 16 14 22 22 H 1.08991 * 109.47006 * 270.16628 * 1 2 3 23 23 H 1.09003 * 109.47106 * 30.16927 * 1 2 3 24 24 H 1.09006 * 109.46897 * 150.16228 * 1 2 3 25 25 H 1.07995 * 126.74919 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.46835 * 144.70888 * 7 6 2 27 27 H 1.08999 * 109.47176 * 24.71397 * 7 6 2 28 28 H 1.08996 * 109.47090 * 59.99931 * 8 7 6 29 29 H 1.08999 * 109.47084 * 300.00104 * 8 7 6 30 30 H 1.09004 * 109.46932 * 300.00373 * 12 10 9 31 31 H 1.08997 * 109.47392 * 59.99712 * 12 10 9 32 32 H 0.97005 * 120.00078 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5322 -0.6405 -0.0033 6 6 2.2579 -1.0965 0.0031 7 6 1.8117 -2.5360 0.0066 8 6 1.7870 -3.0588 1.4443 9 8 1.3577 -4.4459 1.4475 10 6 1.2826 -5.0578 2.6400 11 8 1.5657 -4.4542 3.6476 12 6 0.8440 -6.4972 2.7220 13 16 0.8442 -7.0304 4.4516 14 6 0.3077 -8.6975 4.2579 15 1 0.0935 -9.0849 3.2728 16 6 0.1616 -9.5133 5.3713 17 7 0.4233 -9.0414 6.5719 18 14 -0.4064 -11.2810 5.1659 19 1 -0.6319 -11.5643 3.7257 20 1 0.6342 -12.1997 5.6937 21 1 -1.6723 -11.4844 5.9150 22 1 -0.3633 0.0030 1.0276 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 4.4321 -1.2374 -0.0069 26 1 2.5056 -3.1329 -0.5853 27 1 0.8126 -2.6078 -0.4233 28 1 1.0931 -2.4619 2.0361 29 1 2.7861 -2.9871 1.8742 30 1 -0.1614 -6.5946 2.3121 31 1 1.5315 -7.1197 2.1494 32 1 0.3215 -9.6116 7.3500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345182137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:57 Heat of formation + Delta-G solvation = 7.669923 kcal Electronic energy + Delta-G solvation = -17385.847182 eV Core-core repulsion = 14282.399477 eV Total energy + Delta-G solvation = -3103.447705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.59218 -40.14134 -36.56863 -35.12610 -33.87828 -32.53410 -30.25833 -29.05234 -28.22983 -25.62312 -24.21963 -22.82997 -21.13788 -20.94312 -18.05514 -17.59133 -17.30242 -16.89501 -16.62284 -15.72483 -15.11466 -14.89251 -14.70070 -14.17423 -13.99790 -13.74154 -13.38983 -13.24062 -12.73455 -12.70044 -12.09553 -11.93090 -11.81510 -11.17053 -11.13404 -11.12993 -10.86014 -10.57353 -10.41647 -10.14540 -9.94660 -9.48624 -9.17072 -8.41567 -6.66285 -6.32207 -4.05460 1.17697 1.98243 2.25148 2.54779 2.55333 3.16292 3.19400 3.25648 3.42016 3.99513 4.09795 4.16733 4.34284 4.52819 4.61200 4.65941 4.86101 4.92322 5.03747 5.04005 5.14170 5.26850 5.37053 5.57472 5.60239 5.70055 5.86297 6.00206 6.19808 6.53857 7.50908 8.04739 8.18973 8.25632 9.13497 10.75323 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056888 B = 0.002852 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.074381 B = 9814.292403 C = 9885.093499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.288 5.288 3 N -0.086 5.086 4 N -0.270 5.270 5 C -0.040 4.040 6 C -0.017 4.017 7 C -0.044 4.044 8 C 0.071 3.929 9 O -0.361 6.361 10 C 0.480 3.520 11 O -0.485 6.485 12 C -0.128 4.128 13 S -0.059 6.059 14 C -0.536 4.536 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.095 0.905 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.193 0.807 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 12.648 -15.292 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.082 5.082 3 N -0.065 5.065 4 N -0.135 5.135 5 C -0.197 4.197 6 C -0.149 4.149 7 C -0.084 4.084 8 C -0.005 4.005 9 O -0.279 6.279 10 C 0.321 3.679 11 O -0.370 6.370 12 C -0.276 4.276 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.095 0.905 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.113 0.887 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.210 0.790 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.097 14.988 -13.863 20.416 hybrid contribution -0.835 -2.831 -1.092 3.147 sum -0.932 12.157 -14.954 19.295 Atomic orbital electron populations 1.22353 0.72634 1.06091 1.05505 1.47268 1.09469 1.04528 1.46932 1.78332 0.96691 1.11605 1.19880 1.75116 1.09501 1.12493 1.16380 1.23470 0.97215 0.91961 1.07083 1.21894 0.91468 0.91196 1.10364 1.19947 1.04149 0.87257 0.97007 1.22840 1.01389 0.80016 0.96213 1.86470 1.79771 1.26644 1.35021 1.23339 0.74312 0.89565 0.80663 1.90687 1.44100 1.66115 1.36136 1.23306 1.05078 0.90268 1.08972 1.85458 1.88675 1.13436 0.95722 1.22873 1.52863 0.96383 0.96295 0.90495 1.25013 0.94775 0.99381 0.94378 1.70017 1.45408 1.36651 0.98103 0.86061 0.78416 0.82217 0.78486 1.19488 1.20478 1.20496 0.88675 0.87775 0.88039 0.79048 0.87404 0.89250 0.91379 0.90449 0.87864 0.87784 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.21 59.85 0.67 1.03 16 2 N -0.29 -2.67 3.74 -63.79 -0.24 -2.91 16 3 N -0.09 -1.06 13.16 60.35 0.79 -0.26 16 4 N -0.27 -3.52 12.41 30.23 0.38 -3.15 16 5 C -0.04 -0.40 11.99 -17.74 -0.21 -0.62 16 6 C -0.02 -0.15 6.25 -82.09 -0.51 -0.67 16 7 C -0.04 -0.32 5.93 -27.88 -0.17 -0.49 16 8 C 0.07 0.77 5.45 37.16 0.20 0.97 16 9 O -0.36 -4.96 10.22 -39.27 -0.40 -5.36 16 10 C 0.48 8.55 7.98 36.01 0.29 8.84 16 11 O -0.49 -10.18 15.61 -18.75 -0.29 -10.47 16 12 C -0.13 -2.46 6.27 36.01 0.23 -2.24 16 13 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 14 C -0.54 -14.65 9.50 30.94 0.29 -14.36 16 15 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 17 N -0.87 -25.32 13.22 55.49 0.73 -24.58 16 18 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.10 0.26 7.04 -51.93 -0.37 -0.10 16 25 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.51 7.02 -51.93 -0.36 0.14 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 31 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -34.93 305.09 -4.63 -39.56 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -3.66 Total: -3.77 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.69 Total: -5.58 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 1.66 Total: -30.90 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.69 Total: -15.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.93 -4.63 -39.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345182137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.228 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds