Wall clock time and date at job start Mon Mar 30 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28712 * 125.86856 * 2 1 4 4 N 1.28639 * 110.17960 * 180.24109 * 3 2 1 5 5 C 1.33777 * 108.88287 * 359.76079 * 4 3 2 6 6 C 1.35319 * 125.87002 * 179.83578 * 2 1 3 7 7 C 1.50703 * 126.90821 * 0.03085 * 6 2 1 8 8 C 1.52998 * 109.47221 * 264.71350 * 7 6 2 9 9 O 1.45196 * 109.47070 * 180.02562 * 8 7 6 10 10 C 1.34234 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00068 * 179.97438 * 10 9 8 13 13 S 1.80996 * 109.47240 * 180.02562 * 12 10 9 14 14 C 1.76200 * 100.00090 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00048 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99898 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47255 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46667 * 120.00384 * 18 16 14 21 21 H 1.48500 * 109.47120 * 239.99937 * 18 16 14 22 22 H 1.08991 * 109.47006 * 270.16628 * 1 2 3 23 23 H 1.09003 * 109.47106 * 30.16927 * 1 2 3 24 24 H 1.09006 * 109.46897 * 150.16228 * 1 2 3 25 25 H 1.07995 * 126.74919 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.46835 * 144.70888 * 7 6 2 27 27 H 1.08999 * 109.47176 * 24.71397 * 7 6 2 28 28 H 1.08996 * 109.47090 * 59.99931 * 8 7 6 29 29 H 1.08999 * 109.47084 * 300.00104 * 8 7 6 30 30 H 1.09004 * 109.46932 * 300.00373 * 12 10 9 31 31 H 1.08997 * 109.47392 * 59.99712 * 12 10 9 32 32 H 0.97005 * 120.00078 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5322 -0.6405 -0.0033 6 6 2.2579 -1.0965 0.0031 7 6 1.8117 -2.5360 0.0066 8 6 1.7870 -3.0588 1.4443 9 8 1.3577 -4.4459 1.4475 10 6 1.2826 -5.0578 2.6400 11 8 1.5657 -4.4542 3.6476 12 6 0.8440 -6.4972 2.7220 13 16 0.8442 -7.0304 4.4516 14 6 0.3077 -8.6975 4.2579 15 1 0.0935 -9.0849 3.2728 16 6 0.1616 -9.5133 5.3713 17 7 0.4233 -9.0414 6.5719 18 14 -0.4064 -11.2810 5.1659 19 1 -0.6319 -11.5643 3.7257 20 1 0.6342 -12.1997 5.6937 21 1 -1.6723 -11.4844 5.9150 22 1 -0.3633 0.0030 1.0276 23 1 -0.3633 0.8885 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 4.4321 -1.2374 -0.0069 26 1 2.5056 -3.1329 -0.5853 27 1 0.8126 -2.6078 -0.4233 28 1 1.0931 -2.4619 2.0361 29 1 2.7861 -2.9871 1.8742 30 1 -0.1614 -6.5946 2.3121 31 1 1.5315 -7.1197 2.1494 32 1 0.3215 -9.6116 7.3500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345182137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:57 Heat of formation + Delta-G solvation = -16.107134 kcal Electronic energy + Delta-G solvation = -17386.878233 eV Core-core repulsion = 14282.399477 eV Total energy + Delta-G solvation = -3104.478756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.33908 -41.46997 -37.82146 -35.84551 -34.65997 -34.59654 -31.57787 -30.03945 -28.78798 -27.69708 -25.09644 -23.58654 -22.42855 -21.66704 -19.89734 -18.75258 -18.19450 -17.78901 -17.73019 -17.04421 -16.87437 -16.06777 -15.88563 -15.41246 -14.95984 -14.61878 -14.39695 -14.19024 -13.95745 -13.71389 -13.20606 -13.05437 -12.92554 -12.87861 -12.67748 -12.61391 -11.98625 -11.75188 -11.62076 -11.58230 -11.16402 -11.10928 -10.34975 -10.25893 -8.72130 -8.36427 -6.15800 0.42843 1.03138 1.13821 1.39632 1.43465 1.46532 1.48506 1.58089 1.91339 2.24987 2.99152 3.22468 3.37737 3.58722 3.75255 3.76690 3.96632 4.08883 4.15109 4.22878 4.24426 4.34343 4.48563 4.54333 4.64948 4.82269 4.93640 5.16222 5.28354 5.43197 5.56432 6.19798 6.69085 7.05928 7.40670 8.72932 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056888 B = 0.002852 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.074381 B = 9814.292403 C = 9885.093499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.282 5.282 3 N -0.118 5.118 4 N -0.310 5.310 5 C -0.051 4.051 6 C -0.012 4.012 7 C -0.030 4.030 8 C 0.067 3.933 9 O -0.343 6.343 10 C 0.490 3.510 11 O -0.523 6.523 12 C -0.108 4.108 13 S -0.144 6.144 14 C -0.544 4.544 15 H 0.088 0.912 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.102 0.898 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.214 0.786 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 11.435 -17.502 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.077 5.077 3 N -0.097 5.097 4 N -0.174 5.174 5 C -0.209 4.209 6 C -0.146 4.146 7 C -0.069 4.069 8 C -0.008 4.008 9 O -0.260 6.260 10 C 0.333 3.667 11 O -0.411 6.411 12 C -0.256 4.256 13 S 0.083 5.917 14 C -0.692 4.692 15 H 0.106 0.894 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.821 3.179 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.200 1.200 22 H 0.120 0.880 23 H 0.134 0.866 24 H 0.147 0.853 25 H 0.230 0.770 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.100 13.809 -16.111 21.248 hybrid contribution -0.534 -2.346 -0.495 2.456 sum -1.634 11.464 -16.605 20.244 Atomic orbital electron populations 1.22791 0.70235 1.08150 1.06607 1.47641 1.10857 1.03982 1.45172 1.78258 0.96967 1.12920 1.21512 1.75062 1.10258 1.14185 1.17879 1.23987 0.98823 0.91370 1.06734 1.22098 0.91090 0.91783 1.09580 1.19930 1.06293 0.85942 0.94705 1.23106 1.00864 0.78110 0.98758 1.86428 1.79075 1.28159 1.32302 1.22978 0.73502 0.89049 0.81178 1.90689 1.45911 1.66837 1.37699 1.23092 1.07111 0.91563 1.03848 1.85596 1.89016 1.14340 1.02767 1.23225 1.52488 0.96581 0.96921 0.89391 1.26118 0.94687 1.04314 0.93917 1.70173 1.46875 1.38553 0.99138 0.84888 0.77810 0.75972 0.79185 1.17837 1.20093 1.20040 0.87967 0.86592 0.85286 0.76960 0.85409 0.86678 0.91710 0.91108 0.85643 0.85720 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 11.21 127.77 1.43 1.87 16 2 N -0.28 -4.77 3.74 -355.73 -1.33 -6.10 16 3 N -0.12 -2.87 13.16 37.02 0.49 -2.38 16 4 N -0.31 -8.08 12.41 -58.26 -0.72 -8.80 16 5 C -0.05 -0.97 11.99 83.73 1.00 0.03 16 6 C -0.01 -0.19 6.25 41.35 0.26 0.07 16 7 C -0.03 -0.33 5.93 29.85 0.18 -0.15 16 8 C 0.07 1.28 5.45 71.98 0.39 1.67 16 9 O -0.34 -8.41 10.22 -51.46 -0.53 -8.94 16 10 C 0.49 16.68 7.98 71.24 0.57 17.25 16 11 O -0.52 -21.82 15.61 21.98 0.34 -21.47 16 12 C -0.11 -3.94 6.27 71.24 0.45 -3.49 16 13 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 14 C -0.54 -29.49 9.50 67.95 0.65 -28.84 16 15 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.80 5.49 84.86 0.47 1.26 16 17 N -0.91 -53.97 13.22 21.65 0.29 -53.68 16 18 Si 1.00 41.81 29.55 68.60 2.03 43.83 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.13 0.18 7.04 -2.38 -0.02 0.17 16 25 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 26 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.11 0.75 7.02 -2.39 -0.02 0.73 16 28 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 31 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 32 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -77.57 305.09 5.93 -71.65 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.13 Total: 4.92 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 5.39 Total: -10.34 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.28 Total: -70.96 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.18 Total: -30.41 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -77.57 5.93 -71.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345182137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.538 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds