Wall clock time and date at job start Mon Mar 30 2020 01:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 115.54940 * 2 1 4 4 C 1.53001 * 117.49418 * 214.33008 * 2 1 3 5 5 H 1.09000 * 117.50209 * 0.02562 * 4 2 1 6 6 C 1.50703 * 117.49377 * 145.01995 * 4 2 1 7 7 O 1.21301 * 120.00428 * 0.02562 * 6 4 2 8 8 N 1.34779 * 119.99958 * 180.02562 * 6 4 2 9 9 C 1.40597 * 119.99852 * 180.02562 * 8 6 4 10 10 C 1.40647 * 126.08500 * 0.02620 * 9 8 6 11 11 N 1.30905 * 108.38571 * 180.02562 * 10 9 8 12 12 N 1.40070 * 108.40856 * 359.97438 * 11 10 9 13 13 C 1.37324 * 126.06828 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99658 * 179.97438 * 13 12 11 15 15 C 1.38987 * 120.00059 * 359.96501 * 13 12 11 16 16 N 1.31298 * 120.00046 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47157 * 60.00196 * 17 15 13 19 19 H 1.48494 * 109.47137 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47000 * 300.00544 * 17 15 13 21 21 C 1.35676 * 126.07707 * 179.71602 * 9 8 6 22 22 C 1.53001 * 117.49580 * 145.67183 * 2 1 3 23 23 F 1.39895 * 117.49942 * 214.97467 * 22 2 1 24 24 F 1.39894 * 117.50052 * 359.97438 * 22 2 1 25 25 H 1.09001 * 109.47002 * 325.57811 * 1 2 3 26 26 H 1.08993 * 109.46955 * 85.58248 * 1 2 3 27 27 H 1.09000 * 109.47050 * 205.58077 * 1 2 3 28 28 H 0.97002 * 119.99672 * 0.02562 * 8 6 4 29 29 H 1.07995 * 125.80559 * 359.96041 * 10 9 8 30 30 H 0.96996 * 120.00158 * 179.97438 * 16 15 13 31 31 H 1.08004 * 126.24832 * 359.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7654 5 1 1.6112 -1.8579 -1.2693 6 6 3.5292 -0.7806 -1.4612 7 8 3.9721 0.3470 -1.4008 8 7 4.1934 -1.7294 -2.1505 9 6 5.3998 -1.4122 -2.7992 10 6 6.0271 -0.1534 -2.8124 11 7 7.1261 -0.2472 -3.5174 12 7 7.2440 -1.5641 -3.9799 13 6 8.2633 -2.0608 -4.7545 14 1 8.2560 -3.0977 -5.0565 15 6 9.3043 -1.2291 -5.1499 16 7 9.3133 0.0314 -4.7825 17 14 10.6905 -1.9046 -6.2042 18 1 10.1355 -2.4172 -7.4826 19 1 11.6691 -0.8240 -6.4868 20 1 11.3692 -3.0098 -5.4808 21 6 6.1689 -2.2674 -3.5188 22 6 2.2364 -1.1208 0.7654 23 9 3.4366 -0.8052 1.4112 24 9 1.4340 -2.0668 1.4120 25 1 -0.3633 0.8477 0.5809 26 1 -0.3633 0.0792 -1.0246 27 1 -0.3633 -0.9269 0.4437 28 1 3.8391 -2.6311 -2.1991 29 1 5.6634 0.7389 -2.3248 30 1 10.0400 0.6117 -5.0581 31 1 5.9661 -3.3132 -3.6967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346373551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:01 Heat of formation + Delta-G solvation = -19.119796 kcal Electronic energy + Delta-G solvation = -20109.043216 eV Core-core repulsion = 16450.593435 eV Total energy + Delta-G solvation = -3658.449781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.79019 -47.43927 -40.04583 -38.91549 -36.33268 -34.26265 -33.18166 -30.30218 -29.20305 -27.76459 -25.18642 -23.68052 -21.46694 -20.95951 -20.11961 -19.48268 -18.16781 -17.38710 -17.06519 -16.23677 -15.86434 -15.46159 -15.25972 -14.41462 -14.24316 -14.05726 -13.77119 -13.69124 -13.44891 -13.25612 -13.08213 -12.98588 -12.78467 -11.94650 -11.69351 -11.46677 -11.26096 -10.99185 -10.84593 -10.56784 -10.23809 -10.10885 -9.35336 -9.19044 -8.83827 -8.08671 -6.74703 -6.57242 -4.25022 2.23694 2.82211 2.96174 3.03716 3.08284 3.28421 3.33454 3.70856 3.83009 4.05914 4.30116 4.37408 4.50723 4.72360 4.90098 5.00685 5.09733 5.24922 5.37752 5.45446 5.67453 5.91862 6.21637 6.41282 6.84831 6.92097 7.05339 7.20554 7.83056 8.09545 8.23586 8.56954 8.76539 9.35111 9.64077 10.38650 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.051251 B = 0.003692 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.204146 B = 7581.131612 C = 7681.662338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 H 0.144 0.856 4 C -0.182 4.182 5 H 0.145 0.855 6 C 0.526 3.474 7 O -0.523 6.523 8 N -0.613 5.613 9 C -0.064 4.064 10 C -0.030 4.030 11 N -0.260 5.260 12 N -0.141 5.141 13 C -0.324 4.324 14 H 0.116 0.884 15 C 0.047 3.953 16 N -0.769 5.769 17 Si 0.935 3.065 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.082 4.082 22 C 0.218 3.782 23 F -0.149 7.149 24 F -0.157 7.157 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.399 0.601 29 H 0.176 0.824 30 H 0.276 0.724 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.221 -4.156 6.162 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.162 0.838 4 C -0.205 4.205 5 H 0.163 0.837 6 C 0.310 3.690 7 O -0.399 6.399 8 N -0.254 5.254 9 C -0.169 4.169 10 C -0.206 4.206 11 N -0.091 5.091 12 N 0.092 4.908 13 C -0.456 4.456 14 H 0.134 0.866 15 C -0.171 4.171 16 N -0.395 5.395 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.191 1.191 21 C -0.233 4.233 22 C 0.181 3.819 23 F -0.129 7.129 24 F -0.138 7.138 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.193 0.807 30 H 0.086 0.914 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.708 -2.526 5.768 14.182 hybrid contribution -0.231 -1.575 -0.001 1.592 sum -12.938 -4.101 5.767 14.747 Atomic orbital electron populations 1.21433 0.90274 1.03460 1.03459 1.23730 0.97252 0.96411 0.96002 0.83802 1.23830 0.99910 1.04284 0.92473 0.83689 1.18887 0.84218 0.85419 0.80483 1.90621 1.67211 1.20893 1.61214 1.42349 1.21658 1.12089 1.49292 1.17252 0.92126 0.95886 1.11665 1.24103 0.95041 0.97294 1.04140 1.78265 1.17881 0.95882 1.17107 1.44556 1.12598 1.05601 1.28051 1.19847 0.99535 0.97126 1.29107 0.86603 1.25647 0.98993 0.95104 0.97336 1.70205 1.29751 1.04077 1.35516 0.85884 0.79542 0.78876 0.79786 1.19139 1.20107 1.19141 1.21249 0.94335 0.97566 1.10152 1.19912 0.81479 0.94004 0.86525 1.93094 1.44369 1.92446 1.82995 1.93007 1.72038 1.65573 1.83145 0.90719 0.90476 0.91310 0.76807 0.80718 0.91354 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 10.16 37.16 0.38 -0.58 16 2 C -0.11 -1.24 5.90 -90.61 -0.53 -1.77 16 3 H 0.14 1.71 7.67 -51.93 -0.40 1.32 16 4 C -0.18 -2.21 5.90 -91.73 -0.54 -2.75 16 5 H 0.15 1.25 8.14 -51.93 -0.42 0.83 16 6 C 0.53 9.10 7.22 -10.98 -0.08 9.02 16 7 O -0.52 -11.04 13.41 5.54 0.07 -10.96 16 8 N -0.61 -10.86 5.47 -10.00 -0.05 -10.92 16 9 C -0.06 -1.48 6.90 -83.84 -0.58 -2.05 16 10 C -0.03 -0.80 10.85 -17.04 -0.18 -0.99 16 11 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 12 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 13 C -0.32 -8.56 10.25 -14.81 -0.15 -8.72 16 14 H 0.12 2.72 7.83 -52.48 -0.41 2.30 16 15 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 16 N -0.77 -21.50 11.81 55.49 0.66 -20.85 16 17 Si 0.94 18.85 29.55 -169.99 -5.02 13.83 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 22 C 0.22 2.77 5.14 -26.69 -0.14 2.63 16 23 F -0.15 -2.37 17.13 2.25 0.04 -2.33 16 24 F -0.16 -1.86 16.50 2.25 0.04 -1.82 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.48 7.10 -51.93 -0.37 0.11 16 28 H 0.40 5.38 8.83 -40.82 -0.36 5.02 16 29 H 0.18 4.58 5.92 -52.49 -0.31 4.27 16 30 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.15 2.84 8.06 -52.48 -0.42 2.41 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -33.32 286.77 -4.46 -37.78 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.67 Total: 8.38 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.11 Total: -6.22 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.88 Total: -42.97 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.32 -4.46 -37.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346373551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.660 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds