Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35711 * 117.00178 * 2 1 4 4 C 1.38929 * 119.86654 * 180.02562 * 3 2 1 5 5 C 1.37963 * 120.13455 * 180.02562 * 4 3 2 6 6 F 1.35107 * 120.06913 * 180.02562 * 5 4 3 7 7 C 1.40056 * 119.86516 * 0.02562 * 5 4 3 8 8 C 1.47305 * 120.13600 * 179.97438 * 7 5 4 9 9 O 1.21623 * 120.00120 * 89.99576 * 8 7 5 10 10 N 1.34777 * 119.99911 * 270.00036 * 8 7 5 11 11 C 1.46498 * 119.99828 * 180.27602 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 H 1.07997 * 120.00357 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47105 * 89.99950 * 16 14 12 18 18 H 1.48499 * 109.47427 * 210.00198 * 16 14 12 19 19 H 1.48508 * 109.47164 * 330.00232 * 16 14 12 20 20 C 1.40065 * 119.73284 * 0.25133 * 7 5 4 21 21 F 1.35099 * 120.06755 * 179.72604 * 20 7 5 22 22 C 1.37967 * 119.86435 * 359.47105 * 20 7 5 23 23 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47261 * 300.00014 * 1 2 3 25 25 H 1.09001 * 109.47147 * 60.00359 * 1 2 3 26 26 H 1.08001 * 119.93297 * 0.02562 * 4 3 2 27 27 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 29 29 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 30 30 H 0.96999 * 120.00067 * 179.97438 * 15 14 12 31 31 H 1.07996 * 119.93062 * 180.27044 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4327 1.2786 -0.0005 5 6 4.0649 2.5049 0.0000 6 9 5.4143 2.5709 -0.0011 7 6 3.3048 3.6813 0.0016 8 6 3.9736 4.9938 0.0028 9 8 4.2492 5.5368 -1.0500 10 7 4.2800 5.5930 1.1705 11 6 4.9396 6.9010 1.1716 12 6 5.1633 7.3495 2.5929 13 1 4.8456 6.7230 3.4132 14 6 5.7737 8.5597 2.8459 15 7 6.1602 9.3228 1.8469 16 14 6.0504 9.1160 4.6075 17 1 7.3735 8.6324 5.0773 18 1 6.0149 10.5992 4.6697 19 1 4.9827 8.5585 5.4762 20 6 1.9063 3.6048 0.0080 21 9 1.1666 4.7352 0.0152 22 6 1.2856 2.3726 0.0017 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0178 0.3708 -0.0014 27 1 4.0598 5.1600 2.0101 28 1 5.8988 6.8247 0.6594 29 1 4.3095 7.6262 0.6568 30 1 6.5893 10.1743 2.0249 31 1 0.2074 2.3124 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346932690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = -139.783673 kcal Electronic energy + Delta-G solvation = -20134.812804 eV Core-core repulsion = 16438.837893 eV Total energy + Delta-G solvation = -3695.974911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.12164 -49.08663 -40.43150 -38.91675 -36.98143 -34.23437 -32.37802 -31.01759 -30.58369 -27.96581 -27.07793 -23.95192 -23.01402 -22.31173 -20.12410 -19.05104 -17.90123 -17.85105 -16.58962 -16.50249 -16.08968 -15.96058 -15.82135 -15.37390 -15.15410 -15.02136 -14.78717 -14.35319 -13.98579 -13.33822 -13.04602 -12.57273 -12.50197 -12.34768 -11.97076 -11.86223 -11.61124 -11.17998 -10.95366 -10.88328 -10.33758 -9.43473 -9.33927 -9.08892 -8.75387 -8.63180 -7.96339 -6.16492 -4.23611 0.68967 0.72547 2.63072 3.02954 3.05754 3.25366 3.31156 3.33796 3.69548 3.88526 4.10461 4.34791 4.49672 4.62357 4.72812 4.75044 4.85555 5.07024 5.11873 5.19742 5.59819 5.64653 5.65371 5.76574 6.25987 6.82244 7.25711 7.32032 7.49125 7.63319 7.94765 8.51705 8.71701 8.96543 9.42306 10.93790 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.004274 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.595060 B = 6550.120319 C = 6676.969812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.304 6.304 3 C 0.195 3.805 4 C -0.202 4.202 5 C 0.204 3.796 6 F -0.112 7.112 7 C -0.224 4.224 8 C 0.549 3.451 9 O -0.536 6.536 10 N -0.694 5.694 11 C 0.248 3.752 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.204 3.796 21 F -0.115 7.115 22 C -0.260 4.260 23 H 0.105 0.895 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.155 0.845 27 H 0.393 0.607 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -19.138 -1.629 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C 0.148 3.852 4 C -0.222 4.222 5 C 0.183 3.817 6 F -0.090 7.090 7 C -0.229 4.229 8 C 0.331 3.669 9 O -0.414 6.414 10 N -0.342 5.342 11 C 0.128 3.872 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.184 3.816 21 F -0.093 7.093 22 C -0.280 4.280 23 H 0.124 0.876 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.173 0.827 27 H 0.226 0.774 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.252 -18.659 -2.410 21.922 hybrid contribution -0.083 0.536 1.290 1.399 sum -11.335 -18.123 -1.120 21.405 Atomic orbital electron populations 1.23218 0.77385 1.04586 1.02100 1.86069 1.22190 1.25739 1.87642 1.18279 0.91006 0.83961 0.91978 1.20133 0.92323 0.97610 1.12104 1.16775 0.77296 0.91486 0.96137 1.91613 1.27599 1.97000 1.92779 1.20159 0.92976 0.95716 1.14057 1.17628 0.80042 0.83736 0.85457 1.90797 1.54253 1.65030 1.31367 1.46489 1.58380 1.22856 1.06428 1.19222 0.92848 0.77377 0.97775 1.21201 1.41003 1.04669 0.91345 0.91795 1.24949 0.95009 0.96121 0.97878 1.69975 1.39341 1.11929 1.30978 0.86390 0.78678 0.77876 0.83825 1.20411 1.20974 1.19721 1.16867 0.86728 0.82191 0.95860 1.91601 1.75929 1.48993 1.92767 1.21066 1.01654 0.90454 1.14828 0.87646 0.91944 0.91991 0.82691 0.77421 0.95104 0.95134 0.92391 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.30 -2.67 10.48 -18.84 -0.20 -2.87 16 3 C 0.19 2.05 6.69 -39.06 -0.26 1.79 16 4 C -0.20 -2.33 9.94 -39.43 -0.39 -2.72 16 5 C 0.20 3.02 7.28 -39.00 -0.28 2.73 16 6 F -0.11 -1.83 16.83 2.25 0.04 -1.79 16 7 C -0.22 -3.81 5.64 -104.84 -0.59 -4.40 16 8 C 0.55 12.08 6.52 -12.57 -0.08 12.00 16 9 O -0.54 -13.95 17.11 5.26 0.09 -13.86 16 10 N -0.69 -15.63 5.54 -62.60 -0.35 -15.97 16 11 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 12 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 13 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 14 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.88 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.20 2.99 7.28 -39.00 -0.28 2.71 16 21 F -0.11 -1.86 16.83 2.25 0.04 -1.82 16 22 C -0.26 -2.83 8.99 -39.42 -0.35 -3.18 16 23 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 25 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 26 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.39 7.71 8.30 -40.82 -0.34 7.37 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.15 1.19 6.27 -52.49 -0.33 0.86 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -33.39 291.51 -4.66 -38.05 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.69 Total: 0.29 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -1.70 Total: 3.13 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.39 Total: -41.54 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.11 Total: -16.72 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.39 -4.66 -38.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346932690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.736 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds