Wall clock time and date at job start Mon Mar 30 2020 00:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35711 * 117.00178 * 2 1 4 4 C 1.38929 * 119.86654 * 180.02562 * 3 2 1 5 5 C 1.37963 * 120.13455 * 180.02562 * 4 3 2 6 6 F 1.35107 * 120.06913 * 180.02562 * 5 4 3 7 7 C 1.40056 * 119.86516 * 0.02562 * 5 4 3 8 8 C 1.47305 * 120.13600 * 179.97438 * 7 5 4 9 9 O 1.21623 * 120.00120 * 89.99576 * 8 7 5 10 10 N 1.34777 * 119.99911 * 270.00036 * 8 7 5 11 11 C 1.46498 * 119.99828 * 180.27602 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 H 1.07997 * 120.00357 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47105 * 89.99950 * 16 14 12 18 18 H 1.48499 * 109.47427 * 210.00198 * 16 14 12 19 19 H 1.48508 * 109.47164 * 330.00232 * 16 14 12 20 20 C 1.40065 * 119.73284 * 0.25133 * 7 5 4 21 21 F 1.35099 * 120.06755 * 179.72604 * 20 7 5 22 22 C 1.37967 * 119.86435 * 359.47105 * 20 7 5 23 23 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47261 * 300.00014 * 1 2 3 25 25 H 1.09001 * 109.47147 * 60.00359 * 1 2 3 26 26 H 1.08001 * 119.93297 * 0.02562 * 4 3 2 27 27 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 29 29 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 30 30 H 0.96999 * 120.00067 * 179.97438 * 15 14 12 31 31 H 1.07996 * 119.93062 * 180.27044 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4327 1.2786 -0.0005 5 6 4.0649 2.5049 0.0000 6 9 5.4143 2.5709 -0.0011 7 6 3.3048 3.6813 0.0016 8 6 3.9736 4.9938 0.0028 9 8 4.2492 5.5368 -1.0500 10 7 4.2800 5.5930 1.1705 11 6 4.9396 6.9010 1.1716 12 6 5.1633 7.3495 2.5929 13 1 4.8456 6.7230 3.4132 14 6 5.7737 8.5597 2.8459 15 7 6.1602 9.3228 1.8469 16 14 6.0504 9.1160 4.6075 17 1 7.3735 8.6324 5.0773 18 1 6.0149 10.5992 4.6697 19 1 4.9827 8.5585 5.4762 20 6 1.9063 3.6048 0.0080 21 9 1.1666 4.7352 0.0152 22 6 1.2856 2.3726 0.0017 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0178 0.3708 -0.0014 27 1 4.0598 5.1600 2.0101 28 1 5.8988 6.8247 0.6594 29 1 4.3095 7.6262 0.6568 30 1 6.5893 10.1743 2.0249 31 1 0.2074 2.3124 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346932690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:55 Heat of formation + Delta-G solvation = -164.293210 kcal Electronic energy + Delta-G solvation = -20135.875617 eV Core-core repulsion = 16438.837893 eV Total energy + Delta-G solvation = -3697.037724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.31164 -50.28267 -41.36678 -40.54109 -38.03234 -36.28567 -34.45213 -32.08674 -31.70603 -29.36044 -28.27988 -25.48716 -24.19503 -23.84840 -21.83890 -20.06908 -19.52716 -18.90847 -17.97890 -17.63846 -17.50350 -17.15351 -17.04059 -16.58279 -16.55881 -16.42568 -15.97087 -15.89595 -15.58453 -15.01624 -14.14723 -14.05410 -13.80512 -13.72917 -13.29941 -13.25448 -12.99791 -12.73382 -12.38678 -12.27494 -11.95487 -11.54617 -11.18965 -10.85419 -10.10933 -10.03521 -9.64055 -8.32317 -6.49987 -0.38488 -0.28487 1.33208 1.41895 1.45159 1.56301 1.88015 2.00256 2.22651 2.42473 2.65347 3.02372 3.09801 3.54285 3.62785 3.65770 3.90875 4.32397 4.45380 4.52027 4.55133 4.66840 4.83740 4.85414 5.00750 5.14408 5.25427 5.33008 5.55152 5.76816 6.08449 6.55579 6.64919 7.09977 7.26082 8.80172 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.004274 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.595060 B = 6550.120319 C = 6676.969812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.303 6.303 3 C 0.215 3.785 4 C -0.185 4.185 5 C 0.191 3.809 6 F -0.128 7.128 7 C -0.255 4.255 8 C 0.550 3.450 9 O -0.587 6.587 10 N -0.690 5.690 11 C 0.264 3.736 12 C -0.560 4.560 13 H 0.084 0.916 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.989 3.011 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.255 1.255 20 C 0.192 3.808 21 F -0.130 7.130 22 C -0.237 4.237 23 H 0.130 0.870 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.182 0.818 27 H 0.408 0.592 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.271 0.729 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.553 -21.899 0.200 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.215 6.215 3 C 0.167 3.833 4 C -0.205 4.205 5 C 0.171 3.829 6 F -0.106 7.106 7 C -0.260 4.260 8 C 0.336 3.664 9 O -0.469 6.469 10 N -0.338 5.338 11 C 0.142 3.858 12 C -0.597 4.597 13 H 0.102 0.898 14 C -0.195 4.195 15 N -0.568 5.568 16 Si 0.811 3.189 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.179 1.179 20 C 0.172 3.828 21 F -0.108 7.108 22 C -0.256 4.256 23 H 0.148 0.852 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.200 0.800 27 H 0.244 0.756 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.079 0.921 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.176 -21.479 -0.563 25.205 hybrid contribution 0.382 1.222 0.641 1.432 sum -12.794 -20.257 0.078 23.959 Atomic orbital electron populations 1.23651 0.74955 1.06794 1.03327 1.86113 1.24565 1.24212 1.86606 1.18294 0.90688 0.84658 0.89690 1.20327 0.93154 0.96901 1.10079 1.16916 0.76607 0.91957 0.97434 1.91570 1.28826 1.97118 1.93135 1.19776 0.94139 0.93282 1.18786 1.18367 0.78768 0.85174 0.84141 1.90747 1.56140 1.67013 1.32984 1.46258 1.58235 1.21515 1.07797 1.18692 0.90595 0.78927 0.97554 1.21566 1.41275 1.05395 0.91477 0.89830 1.26095 0.94192 0.95999 1.03168 1.70137 1.40107 1.12538 1.33999 0.85102 0.79189 0.77260 0.77335 1.19449 1.20684 1.17914 1.17049 0.85679 0.83087 0.96984 1.91563 1.76025 1.50137 1.93089 1.21329 1.03385 0.88627 1.12247 0.85197 0.90605 0.90798 0.80028 0.75601 0.98941 0.98913 0.92064 0.79473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.80 113.37 1.11 1.14 16 2 O -0.30 -3.86 10.48 -90.32 -0.95 -4.80 16 3 C 0.21 3.69 6.69 22.60 0.15 3.84 16 4 C -0.19 -3.75 9.94 22.37 0.22 -3.53 16 5 C 0.19 5.58 7.28 22.65 0.16 5.75 16 6 F -0.13 -4.28 16.83 44.97 0.76 -3.52 16 7 C -0.25 -8.81 5.64 -20.01 -0.11 -8.93 16 8 C 0.55 25.60 6.52 86.63 0.56 26.16 16 9 O -0.59 -32.77 17.11 -4.10 -0.07 -32.84 16 10 N -0.69 -32.68 5.54 -470.22 -2.61 -35.29 16 11 C 0.26 15.34 5.43 85.63 0.46 15.81 16 12 C -0.56 -31.57 9.28 25.60 0.24 -31.33 16 13 H 0.08 4.28 7.60 -2.91 -0.02 4.26 16 14 C 0.01 0.30 5.46 84.66 0.46 0.76 16 15 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 16 Si 0.99 43.07 29.54 68.60 2.03 45.09 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 C 0.19 5.47 7.28 22.65 0.16 5.63 16 21 F -0.13 -4.21 16.83 44.97 0.76 -3.45 16 22 C -0.24 -4.35 8.99 22.37 0.20 -4.15 16 23 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 24 H 0.08 0.23 7.65 -2.39 -0.02 0.21 16 25 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 26 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.41 16.49 8.30 -92.71 -0.77 15.72 16 28 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.19 2.04 6.27 -2.91 -0.02 2.02 16 Total: -1.00 -77.47 291.51 4.25 -73.22 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.42 Total: 7.26 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 3.63 Total: 11.16 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -2.32 Total: -92.12 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.02 Total: -37.64 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 1.51 Total: -6.97 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -77.47 4.25 -73.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346932690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.073 kcal (2) G-P(sol) polarization free energy of solvation -77.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds