Wall clock time and date at job start Mon Mar 30 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35115 * 126.40390 * 2 1 4 4 Cl 1.73596 * 125.66712 * 0.02562 * 3 2 1 5 5 N 1.30620 * 108.66606 * 180.29047 * 3 2 1 6 6 C 1.34204 * 109.25766 * 359.73071 * 5 3 2 7 7 C 1.34596 * 108.05260 * 0.02562 * 6 5 3 8 8 C 1.50695 * 126.58513 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47433 * 95.02069 * 8 7 6 10 10 C 1.47964 * 111.00172 * 169.99748 * 9 8 7 11 11 C 1.53937 * 86.18132 * 222.41467 * 10 9 8 12 12 O 1.42894 * 113.73981 * 269.25469 * 11 10 9 13 13 C 1.50700 * 113.72840 * 138.07935 * 11 10 9 14 14 H 1.08006 * 120.00491 * 6.89307 * 13 11 10 15 15 C 1.37878 * 120.00369 * 186.89236 * 13 11 10 16 16 N 1.31512 * 120.00488 * 178.35207 * 15 13 11 17 17 Si 1.86806 * 119.99519 * 358.35353 * 15 13 11 18 18 H 1.48501 * 109.46788 * 270.00090 * 17 15 13 19 19 H 1.48497 * 109.47068 * 29.99770 * 17 15 13 20 20 H 1.48501 * 109.47186 * 150.00232 * 17 15 13 21 21 C 1.48190 * 111.06990 * 70.56786 * 9 8 7 22 22 H 1.09002 * 109.47204 * 270.16378 * 1 2 3 23 23 H 1.09002 * 109.47460 * 30.15804 * 1 2 3 24 24 H 1.08991 * 109.47543 * 150.15969 * 1 2 3 25 25 H 1.08002 * 125.97154 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.47171 * 335.01932 * 8 7 6 27 27 H 1.09001 * 109.47530 * 215.02255 * 8 7 6 28 28 H 1.08999 * 113.75435 * 108.10252 * 10 9 8 29 29 H 1.08994 * 113.86299 * 336.75063 * 10 9 8 30 30 H 0.96694 * 114.00278 * 162.48132 * 12 11 10 31 31 H 0.96996 * 120.00144 * 358.18972 * 16 15 13 32 32 H 1.08999 * 113.76263 * 23.23991 * 21 9 8 33 33 H 1.09002 * 113.82370 * 251.81108 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2668 1.0875 0.0000 4 17 1.7324 2.7391 0.0006 5 7 3.5109 0.6895 -0.0063 6 6 3.5465 -0.6520 -0.0045 7 6 2.2784 -1.1029 0.0026 8 6 1.8375 -2.5439 0.0075 9 7 1.5851 -2.9742 1.3891 10 6 0.9258 -4.2985 1.4201 11 6 0.0294 -3.7118 2.5255 12 8 0.5390 -3.9108 3.8455 13 6 -1.4231 -4.0911 2.3934 14 1 -1.7283 -4.8074 1.6449 15 6 -2.3625 -3.5237 3.2280 16 7 -3.6341 -3.8301 3.0914 17 14 -1.8290 -2.3196 4.5528 18 1 -1.5286 -3.0612 5.8038 19 1 -0.6132 -1.5953 4.1027 20 1 -2.9209 -1.3452 4.8049 21 6 0.3656 -2.3314 1.9329 22 1 -0.3634 0.0029 1.0277 23 1 -0.3634 0.8886 -0.5163 24 1 -0.3634 -0.8913 -0.5113 25 1 4.4371 -1.2630 -0.0089 26 1 2.6198 -3.1647 -0.4292 27 1 0.9235 -2.6463 -0.5776 28 1 1.5750 -5.1042 1.7628 29 1 0.3891 -4.5454 0.5042 30 1 0.1426 -3.3326 4.5115 31 1 -3.9143 -4.4349 2.3868 32 1 -0.3351 -1.9999 1.1666 33 1 0.5680 -1.5684 2.6846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349877179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:02 Heat of formation + Delta-G solvation = 35.895811 kcal Electronic energy + Delta-G solvation = -19233.189423 eV Core-core repulsion = 16128.921978 eV Total energy + Delta-G solvation = -3104.267445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.29968 -40.99675 -38.03183 -36.73118 -35.20952 -34.66550 -32.63533 -29.34605 -28.30030 -27.06839 -27.03552 -23.89381 -22.64963 -21.14213 -20.78986 -19.95376 -18.44939 -17.80261 -17.34356 -16.86635 -16.46392 -16.04608 -15.76538 -15.16604 -14.85666 -14.65973 -14.29380 -14.12375 -13.96131 -13.60615 -13.34971 -12.97577 -12.94180 -12.78004 -12.50606 -12.29259 -12.08157 -11.57884 -11.22534 -11.21112 -10.84884 -10.80544 -10.43917 -9.82625 -9.37105 -8.78085 -6.58546 0.23492 0.71567 1.34080 1.40659 1.55609 1.80378 1.87079 2.34536 2.84415 3.00410 3.41186 3.64999 3.71208 3.81395 4.01378 4.04774 4.10593 4.23620 4.34081 4.50353 4.56760 4.62137 4.71185 4.85941 5.05140 5.07955 5.31482 5.52794 5.67839 5.74573 5.88820 6.06788 6.39610 6.71353 6.81841 7.25120 8.53036 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.006302 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.943716 B = 4442.227356 C = 5078.077327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.440 5.440 3 C 0.226 3.774 4 Cl 0.044 6.956 5 N -0.494 5.494 6 C -0.011 4.011 7 C 0.002 3.998 8 C 0.095 3.905 9 N -0.471 5.471 10 C 0.031 3.969 11 C 0.182 3.818 12 O -0.563 6.563 13 C -0.610 4.610 14 H 0.034 0.966 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 1.067 2.933 18 H -0.262 1.262 19 H -0.240 1.240 20 H -0.285 1.285 21 C -0.023 4.023 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.198 0.802 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.355 0.645 31 H 0.258 0.742 32 H 0.080 0.920 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 9.368 -7.470 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.126 5.126 3 C -0.060 4.060 4 Cl 0.071 6.929 5 N -0.217 5.217 6 C -0.160 4.160 7 C -0.113 4.113 8 C -0.034 4.034 9 N -0.194 5.194 10 C -0.097 4.097 11 C 0.142 3.858 12 O -0.373 6.373 13 C -0.648 4.648 14 H 0.053 0.947 15 C -0.210 4.210 16 N -0.565 5.565 17 Si 0.889 3.111 18 H -0.188 1.188 19 H -0.165 1.165 20 H -0.211 1.211 21 C -0.152 4.152 22 H 0.102 0.898 23 H 0.131 0.869 24 H 0.118 0.882 25 H 0.215 0.785 26 H 0.142 0.858 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.206 0.794 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.926 10.617 -6.266 15.827 hybrid contribution -1.858 -1.272 -1.515 2.714 sum 8.068 9.345 -7.781 14.593 Atomic orbital electron populations 1.22545 0.74813 1.06444 1.04990 1.45210 1.08608 1.05062 1.53691 1.23194 0.86744 0.84886 1.11172 1.98398 1.88772 1.08412 1.97276 1.70176 1.17454 1.13345 1.20700 1.22438 0.96986 0.89399 1.07136 1.21256 0.90968 0.89221 1.09856 1.21157 1.02257 0.88283 0.91672 1.68705 1.30242 1.03529 1.16897 1.23914 0.95073 0.93293 0.97461 1.20626 0.91250 0.92690 0.81259 1.86444 1.67490 1.64733 1.18609 1.22550 0.93017 1.28076 1.21173 0.94719 1.27066 0.93196 0.99566 1.01208 1.70911 1.17256 1.35002 1.33308 0.83879 0.76705 0.75539 0.74956 1.18755 1.16459 1.21126 1.25093 0.91320 0.98911 0.99918 0.89830 0.86946 0.88246 0.78510 0.85783 0.92685 0.89377 0.90081 0.79434 0.93316 0.90201 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 8.92 127.77 1.14 2.32 16 2 N -0.44 -11.72 3.15 -526.56 -1.66 -13.38 16 3 C 0.23 6.35 8.51 180.20 1.53 7.88 16 4 Cl 0.04 0.99 28.77 -2.72 -0.08 0.91 16 5 N -0.49 -15.23 11.26 -191.04 -2.15 -17.38 16 6 C -0.01 -0.30 11.79 83.50 0.98 0.68 16 7 C 0.00 0.06 6.04 40.91 0.25 0.31 16 8 C 0.10 2.51 5.08 85.56 0.43 2.94 16 9 N -0.47 -15.91 6.25 -914.74 -5.72 -21.63 16 10 C 0.03 1.14 7.36 86.41 0.64 1.78 16 11 C 0.18 8.03 1.06 -10.89 -0.01 8.02 16 12 O -0.56 -25.73 13.26 -148.98 -1.98 -27.70 16 13 C -0.61 -31.89 9.05 25.60 0.23 -31.66 16 14 H 0.03 1.98 8.04 -2.91 -0.02 1.95 16 15 C -0.01 -0.55 5.47 84.66 0.46 -0.08 16 16 N -0.93 -54.29 13.70 21.45 0.29 -53.99 16 17 Si 1.07 45.12 24.77 68.60 1.70 46.82 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.24 -8.87 4.71 99.48 0.47 -8.40 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.02 -0.87 4.56 86.37 0.39 -0.48 16 22 H 0.08 1.99 7.08 -2.39 -0.02 1.97 16 23 H 0.11 1.91 7.81 -2.39 -0.02 1.89 16 24 H 0.10 2.10 6.65 -2.39 -0.02 2.08 16 25 H 0.20 4.42 8.06 -2.91 -0.02 4.39 16 26 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.06 1.40 6.93 -2.39 -0.02 1.38 16 28 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.08 2.82 7.75 -2.39 -0.02 2.80 16 30 H 0.36 14.93 4.33 -74.06 -0.32 14.60 16 31 H 0.26 15.22 8.71 -92.71 -0.81 14.41 16 32 H 0.08 2.84 5.02 -2.39 -0.01 2.82 16 33 H 0.07 2.71 6.55 -2.39 -0.02 2.69 16 Total: -1.00 -64.48 281.15 -2.98 -67.46 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.55 Total: 27.18 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 6.05 Total: -8.30 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -9.24 Total: -106.38 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.98 Total: -27.70 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.70 Total: 46.82 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -0.08 Total: 0.91 kcal Total: -64.48 -2.98 -67.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349877179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.354 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds