Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47533 * 2 1 4 4 C 1.50698 * 109.47394 * 239.99604 * 2 1 3 5 5 H 1.08000 * 120.00132 * 240.00312 * 4 2 1 6 6 C 1.37875 * 119.99929 * 60.00682 * 4 2 1 7 7 N 1.31521 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46988 * 89.99557 * 8 6 4 10 10 H 1.48492 * 109.47220 * 209.99547 * 8 6 4 11 11 H 1.48500 * 109.46652 * 329.99886 * 8 6 4 12 12 N 1.46505 * 109.46860 * 119.99528 * 2 1 3 13 13 C 1.46504 * 119.99540 * 60.00189 * 12 2 1 14 14 C 1.34765 * 120.00395 * 240.00107 * 12 2 1 15 15 O 1.21571 * 120.00293 * 5.37504 * 14 12 2 16 16 C 1.47716 * 120.00245 * 185.37561 * 14 12 2 17 17 C 1.41499 * 126.51187 * 185.96467 * 16 14 12 18 18 C 1.35517 * 105.48100 * 179.87675 * 17 16 14 19 19 Cl 1.73603 * 126.40263 * 180.13069 * 18 17 16 20 20 N 1.35065 * 107.19611 * 0.37974 * 18 17 16 21 21 C 1.46498 * 124.88177 * 179.78592 * 20 18 17 22 22 N 1.28456 * 110.23447 * 359.74536 * 20 18 17 23 23 H 1.09004 * 109.46449 * 60.00198 * 1 2 3 24 24 H 1.08999 * 109.47222 * 300.00548 * 1 2 3 25 25 H 1.08994 * 109.46992 * 179.97438 * 1 2 3 26 26 H 0.96997 * 120.00038 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46937 * 95.36430 * 13 12 2 28 28 H 1.09003 * 109.47195 * 215.35980 * 13 12 2 29 29 H 1.08998 * 109.47376 * 335.36395 * 13 12 2 30 30 H 1.08000 * 127.25940 * 0.02562 * 17 16 14 31 31 H 1.09000 * 109.47158 * 269.98244 * 21 20 18 32 32 H 1.09004 * 109.47499 * 29.98104 * 21 20 18 33 33 H 1.08999 * 109.47448 * 149.98126 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3228 -1.1196 -4.0079 9 1 1.3451 -2.1616 -4.4123 10 1 2.4876 -0.1403 -5.1119 11 1 3.6311 -1.7567 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7930 -0.0356 2.0834 15 8 3.0066 1.1529 1.9430 16 6 3.3829 -0.7619 3.2265 17 6 4.1137 -0.1951 4.2974 18 6 4.4477 -1.2360 5.0983 19 17 5.3523 -1.1490 6.5775 20 7 3.9500 -2.3545 4.5278 21 6 4.0921 -3.7071 5.0722 22 7 3.3333 -2.0616 3.4397 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7091 1.1613 -3.4844 27 1 2.4624 -2.7356 1.0559 28 1 1.5303 -2.2623 2.4966 29 1 0.7370 -2.3252 0.9044 30 1 4.3526 0.8475 4.4465 31 1 5.0013 -4.1629 4.6801 32 1 4.1507 -3.6570 6.1596 33 1 3.2302 -4.3080 4.7822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355146525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = 53.410124 kcal Electronic energy + Delta-G solvation = -18709.182761 eV Core-core repulsion = 15605.674793 eV Total energy + Delta-G solvation = -3103.507968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.67576 -38.73073 -37.06113 -35.30298 -33.64364 -32.71363 -30.58440 -29.38123 -27.34904 -26.02658 -25.16369 -23.25461 -21.46501 -20.62440 -18.78960 -17.29695 -16.61841 -16.40387 -16.08154 -15.24441 -14.33477 -14.29932 -14.16467 -14.05443 -13.15742 -13.00530 -12.79769 -12.54977 -12.32347 -12.13384 -11.93148 -11.53111 -11.38760 -11.05019 -10.77609 -10.70129 -10.43179 -10.22355 -10.11722 -9.23914 -9.13424 -9.07480 -8.99719 -8.39575 -7.52783 -6.03258 -4.10934 1.36511 1.61600 2.08889 2.47371 3.29699 3.36545 3.40086 3.91982 3.99982 4.26326 4.44232 4.81194 4.93093 5.09052 5.14363 5.27780 5.45793 5.67587 6.03519 6.23447 6.29508 6.42039 6.56659 6.83500 6.89912 7.10373 7.47538 7.55261 7.75756 7.81658 8.06799 8.22748 8.55682 8.86039 9.05706 9.55258 11.02095 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.004457 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.703075 B = 6281.428580 C = 6511.247023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.576 5.576 13 C 0.094 3.906 14 C 0.586 3.414 15 O -0.543 6.543 16 C 0.011 3.989 17 C -0.154 4.154 18 C 0.043 3.957 19 Cl -0.007 7.007 20 N -0.285 5.285 21 C 0.083 3.917 22 N -0.235 5.235 23 H 0.095 0.905 24 H 0.013 0.987 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.171 0.829 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -9.183 16.917 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.050 4.050 14 C 0.370 3.630 15 O -0.420 6.420 16 C -0.149 4.149 17 C -0.183 4.183 18 C -0.107 4.107 19 Cl 0.021 6.979 20 N -0.075 5.075 21 C -0.057 4.057 22 N -0.072 5.072 23 H 0.113 0.887 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.189 0.811 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.864 -9.551 16.395 19.587 hybrid contribution 0.793 -0.026 -0.285 0.843 sum 5.657 -9.576 16.110 19.577 Atomic orbital electron populations 1.22096 0.98021 0.99463 1.00963 1.19032 0.91093 0.94539 0.79584 0.91699 1.21324 1.31788 1.12984 0.90172 0.92198 1.24885 0.94983 0.94979 0.98913 1.69883 1.36429 1.22594 1.23729 0.86480 0.79192 0.79271 0.82364 1.20635 1.21112 1.19960 1.48140 1.47530 1.12188 1.22697 1.21671 1.00710 0.82348 1.00273 1.16863 0.79564 0.85914 0.80679 1.90752 1.62025 1.14220 1.74981 1.22296 1.04168 0.89378 0.99072 1.21478 1.03120 0.99732 0.93987 1.21875 1.05965 0.89081 0.93742 1.98380 1.71867 1.97876 1.29803 1.45627 1.38300 1.07425 1.16161 1.22207 1.05139 0.78488 0.99859 1.74071 1.14700 1.16974 1.01428 0.88702 0.96812 0.95039 0.92698 0.93284 0.91883 0.91145 0.81137 0.89425 0.88819 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.96 37.16 0.33 -3.26 16 2 C 0.26 6.77 2.62 -69.08 -0.18 6.59 16 3 H 0.07 1.95 6.91 -51.93 -0.36 1.59 16 4 C -0.52 -14.47 8.37 -34.44 -0.29 -14.75 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.58 -13.17 2.75 -176.42 -0.49 -13.66 16 13 C 0.09 1.77 8.51 59.85 0.51 2.28 16 14 C 0.59 13.27 7.67 -12.39 -0.10 13.18 16 15 O -0.54 -13.96 16.27 5.30 0.09 -13.87 16 16 C 0.01 0.20 6.75 -82.76 -0.56 -0.36 16 17 C -0.15 -2.41 10.80 -39.31 -0.42 -2.84 16 18 C 0.04 0.56 7.44 -17.10 -0.13 0.43 16 19 Cl -0.01 -0.07 28.67 -51.86 -1.49 -1.56 16 20 N -0.28 -3.58 3.70 -64.87 -0.24 -3.82 16 21 C 0.08 0.60 11.14 59.85 0.67 1.27 16 22 N -0.24 -3.75 8.76 33.42 0.29 -3.46 16 23 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.06 5.96 -51.93 -0.31 0.75 16 29 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 30 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.48 7.71 -51.93 -0.40 0.08 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -32.17 296.23 -5.74 -37.91 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.71 Total: -1.82 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.26 Total: 4.22 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.19 Total: -45.63 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.49 Total: -1.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.17 -5.74 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355146525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.318 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds