Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47533 * 2 1 4 4 C 1.50698 * 109.47394 * 239.99604 * 2 1 3 5 5 H 1.08000 * 120.00132 * 240.00312 * 4 2 1 6 6 C 1.37875 * 119.99929 * 60.00682 * 4 2 1 7 7 N 1.31521 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46988 * 89.99557 * 8 6 4 10 10 H 1.48492 * 109.47220 * 209.99547 * 8 6 4 11 11 H 1.48500 * 109.46652 * 329.99886 * 8 6 4 12 12 N 1.46505 * 109.46860 * 119.99528 * 2 1 3 13 13 C 1.46504 * 119.99540 * 60.00189 * 12 2 1 14 14 C 1.34765 * 120.00395 * 240.00107 * 12 2 1 15 15 O 1.21571 * 120.00293 * 5.37504 * 14 12 2 16 16 C 1.47716 * 120.00245 * 185.37561 * 14 12 2 17 17 C 1.41499 * 126.51187 * 185.96467 * 16 14 12 18 18 C 1.35517 * 105.48100 * 179.87675 * 17 16 14 19 19 Cl 1.73603 * 126.40263 * 180.13069 * 18 17 16 20 20 N 1.35065 * 107.19611 * 0.37974 * 18 17 16 21 21 C 1.46498 * 124.88177 * 179.78592 * 20 18 17 22 22 N 1.28456 * 110.23447 * 359.74536 * 20 18 17 23 23 H 1.09004 * 109.46449 * 60.00198 * 1 2 3 24 24 H 1.08999 * 109.47222 * 300.00548 * 1 2 3 25 25 H 1.08994 * 109.46992 * 179.97438 * 1 2 3 26 26 H 0.96997 * 120.00038 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46937 * 95.36430 * 13 12 2 28 28 H 1.09003 * 109.47195 * 215.35980 * 13 12 2 29 29 H 1.08998 * 109.47376 * 335.36395 * 13 12 2 30 30 H 1.08000 * 127.25940 * 0.02562 * 17 16 14 31 31 H 1.09000 * 109.47158 * 269.98244 * 21 20 18 32 32 H 1.09004 * 109.47499 * 29.98104 * 21 20 18 33 33 H 1.08999 * 109.47448 * 149.98126 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6995 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3228 -1.1196 -4.0079 9 1 1.3451 -2.1616 -4.4123 10 1 2.4876 -0.1403 -5.1119 11 1 3.6311 -1.7567 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7930 -0.0356 2.0834 15 8 3.0066 1.1529 1.9430 16 6 3.3829 -0.7619 3.2265 17 6 4.1137 -0.1951 4.2974 18 6 4.4477 -1.2360 5.0983 19 17 5.3523 -1.1490 6.5775 20 7 3.9500 -2.3545 4.5278 21 6 4.0921 -3.7071 5.0722 22 7 3.3333 -2.0616 3.4397 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7091 1.1613 -3.4844 27 1 2.4624 -2.7356 1.0559 28 1 1.5303 -2.2623 2.4966 29 1 0.7370 -2.3252 0.9044 30 1 4.3526 0.8475 4.4465 31 1 5.0013 -4.1629 4.6801 32 1 4.1507 -3.6570 6.1596 33 1 3.2302 -4.3080 4.7822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355146525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = 32.306495 kcal Electronic energy + Delta-G solvation = -18710.097883 eV Core-core repulsion = 15605.674793 eV Total energy + Delta-G solvation = -3104.423090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.82883 -40.49797 -37.97953 -37.19830 -35.00460 -34.39254 -31.93516 -31.11491 -28.41094 -27.64939 -27.26824 -24.70698 -22.64293 -22.23415 -20.33394 -18.68430 -18.34763 -17.73362 -17.57956 -17.06399 -16.13557 -15.99799 -15.33334 -15.13588 -14.74787 -14.42744 -14.04477 -13.76165 -13.51619 -13.47715 -13.29364 -13.07967 -12.96599 -12.70139 -12.68795 -12.51033 -12.19102 -12.12986 -11.75021 -11.18451 -10.99824 -10.51396 -10.27745 -10.10115 -9.36551 -8.13582 -6.30308 0.37033 0.40432 0.79668 1.42675 1.44308 1.53035 1.55718 2.27403 2.36275 2.48934 3.13873 3.16493 3.78608 4.14685 4.31815 4.35056 4.41035 4.52804 4.63075 4.73236 4.79916 4.90169 4.99000 5.05344 5.13066 5.43689 5.46806 5.63107 5.66571 6.02457 6.15186 6.58343 6.74145 6.78532 7.23479 7.43132 8.91120 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.004457 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.703075 B = 6281.428580 C = 6511.247023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.585 5.585 13 C 0.100 3.900 14 C 0.579 3.421 15 O -0.589 6.589 16 C -0.023 4.023 17 C -0.171 4.171 18 C 0.057 3.943 19 Cl 0.030 6.970 20 N -0.267 5.267 21 C 0.067 3.933 22 N -0.235 5.235 23 H 0.072 0.928 24 H 0.021 0.979 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.171 0.829 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -11.914 18.337 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.032 0.968 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.314 5.314 13 C -0.043 4.043 14 C 0.365 3.635 15 O -0.470 6.470 16 C -0.181 4.181 17 C -0.200 4.200 18 C -0.094 4.094 19 Cl 0.058 6.942 20 N -0.059 5.059 21 C -0.071 4.071 22 N -0.074 5.074 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.189 0.811 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.670 -12.325 17.842 22.414 hybrid contribution 0.624 0.759 -0.549 1.125 sum 6.294 -11.566 17.293 21.736 Atomic orbital electron populations 1.21889 0.96772 1.00252 1.00196 1.18681 0.92008 0.92344 0.81048 0.96758 1.21522 1.32150 1.13088 0.91050 0.92397 1.25722 0.95002 0.95613 1.01906 1.70019 1.37156 1.23744 1.24533 0.85422 0.78766 0.78279 0.78332 1.19132 1.20911 1.19792 1.48132 1.47773 1.13615 1.21860 1.21781 1.00715 0.79968 1.01800 1.17411 0.78909 0.85686 0.81453 1.90701 1.63520 1.16364 1.76392 1.21610 1.06837 0.90589 0.99039 1.21544 1.03643 1.00731 0.94098 1.21836 1.04961 0.88319 0.94315 1.98401 1.70790 1.97801 1.27239 1.46116 1.35899 1.09175 1.14670 1.22784 1.06926 0.75876 1.01469 1.73929 1.15169 1.15537 1.02746 0.90927 0.96029 0.93306 0.92505 0.92963 0.89628 0.90968 0.81150 0.87390 0.86167 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.96 71.98 0.64 -5.99 16 2 C 0.26 14.24 2.62 44.24 0.12 14.36 16 3 H 0.01 0.93 6.91 -2.39 -0.02 0.91 16 4 C -0.54 -30.37 8.37 25.60 0.21 -30.16 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.02 0.97 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.58 -27.45 2.75 -830.33 -2.29 -29.73 16 13 C 0.10 3.70 8.51 127.77 1.09 4.79 16 14 C 0.58 27.27 7.67 86.75 0.67 27.93 16 15 O -0.59 -32.23 16.27 -3.94 -0.06 -32.29 16 16 C -0.02 -0.86 6.75 42.46 0.29 -0.57 16 17 C -0.17 -5.29 10.80 22.44 0.24 -5.05 16 18 C 0.06 1.33 7.44 83.57 0.62 1.95 16 19 Cl 0.03 0.48 28.67 -2.72 -0.08 0.40 16 20 N -0.27 -5.94 3.70 -359.15 -1.33 -7.27 16 21 C 0.07 0.68 11.14 127.77 1.42 2.11 16 22 N -0.24 -7.11 8.76 -48.17 -0.42 -7.53 16 23 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 2.21 6.67 -2.39 -0.02 2.20 16 26 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.09 2.76 5.96 -2.39 -0.01 2.75 16 29 H 0.07 2.61 6.44 -2.39 -0.02 2.60 16 30 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.12 0.65 7.71 -2.38 -0.02 0.63 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.52 296.23 4.98 -67.54 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.13 Total: 5.47 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.75 Total: 10.78 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.79 Total: -97.69 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.06 Total: -32.29 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -72.52 4.98 -67.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355146525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.847 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds