Wall clock time and date at job start Mon Mar 30 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47020 * 2 1 4 4 C 1.50704 * 109.47055 * 119.99630 * 2 1 3 5 5 H 1.07999 * 119.99724 * 119.99829 * 4 2 1 6 6 C 1.37876 * 119.99886 * 300.00486 * 4 2 1 7 7 N 1.31509 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99831 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46840 * 89.99821 * 8 6 4 10 10 H 1.48495 * 109.47335 * 209.99867 * 8 6 4 11 11 H 1.48498 * 109.47272 * 330.00005 * 8 6 4 12 12 N 1.46494 * 109.47149 * 239.99797 * 2 1 3 13 13 C 1.46505 * 120.00234 * 299.99619 * 12 2 1 14 14 C 1.34783 * 119.99891 * 120.00326 * 12 2 1 15 15 O 1.21570 * 119.99992 * 4.14349 * 14 12 2 16 16 C 1.47713 * 119.99802 * 184.14479 * 14 12 2 17 17 C 1.41503 * 126.50968 * 184.41132 * 16 14 12 18 18 C 1.35511 * 105.48288 * 179.84762 * 17 16 14 19 19 Cl 1.73602 * 126.40036 * 180.12322 * 18 17 16 20 20 N 1.35062 * 107.19627 * 0.41101 * 18 17 16 21 21 C 1.46501 * 124.88624 * 179.72287 * 20 18 17 22 22 N 1.28462 * 110.23604 * 359.73029 * 20 18 17 23 23 H 1.08999 * 109.47433 * 300.00333 * 1 2 3 24 24 H 1.08996 * 109.47047 * 60.00293 * 1 2 3 25 25 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 26 26 H 0.97005 * 120.00070 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47244 * 264.22035 * 13 12 2 28 28 H 1.09005 * 109.46516 * 144.22299 * 13 12 2 29 29 H 1.09001 * 109.46824 * 24.22689 * 13 12 2 30 30 H 1.08005 * 127.25423 * 359.96820 * 17 16 14 31 31 H 1.08997 * 109.47479 * 270.03572 * 21 20 18 32 32 H 1.09010 * 109.46719 * 30.03194 * 21 20 18 33 33 H 1.08999 * 109.47201 * 150.02725 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.6295 -0.5457 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5660 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.1493 1.1040 -1.8544 16 6 3.2100 -0.7026 -3.3337 17 6 4.0872 -0.1812 -4.3140 18 6 4.1732 -1.1391 -5.2686 19 17 5.1153 -1.0607 -6.7247 20 7 3.3841 -2.1635 -4.8786 21 6 3.1872 -3.4038 -5.6331 22 7 2.8309 -1.8939 -3.7510 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7085 1.1613 3.4844 27 1 2.4658 -2.7353 -1.0623 28 1 1.5234 -2.2606 -2.4957 29 1 0.7410 -2.3273 -0.8983 30 1 4.5849 0.7773 -4.3026 31 1 2.3433 -3.2857 -6.3126 32 1 4.0870 -3.6269 -6.2066 33 1 2.9852 -4.2216 -4.9414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355146530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:54 Heat of formation + Delta-G solvation = 34.876480 kcal Electronic energy + Delta-G solvation = -18703.731043 eV Core-core repulsion = 15599.419396 eV Total energy + Delta-G solvation = -3104.311647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.83744 -40.49501 -37.98039 -37.19940 -35.01600 -34.39134 -31.96625 -31.10389 -28.40894 -27.64780 -27.27121 -24.70861 -22.64890 -22.23798 -20.36716 -18.63629 -18.40712 -17.73954 -17.56723 -17.06880 -16.14238 -15.99450 -15.35718 -15.13888 -14.71765 -14.42982 -14.06629 -13.77548 -13.55335 -13.49604 -13.33186 -13.12569 -12.94880 -12.72161 -12.71032 -12.47989 -12.18593 -12.10312 -11.59077 -11.19060 -10.96534 -10.51774 -10.28371 -10.12032 -9.35265 -8.13577 -6.30094 0.36297 0.38972 0.79759 1.42475 1.43925 1.52331 1.55021 2.26514 2.38009 2.48778 3.14156 3.15589 3.78202 4.14094 4.32517 4.35297 4.38659 4.55413 4.63635 4.77447 4.77889 4.89747 4.97055 5.05471 5.15571 5.44829 5.48308 5.64163 5.67960 6.02385 6.15635 6.58362 6.74669 6.79000 7.23816 7.43248 8.91082 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035042 B = 0.004360 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.841837 B = 6420.717511 C = 6558.162536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.014 0.986 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.264 1.264 12 N -0.584 5.584 13 C 0.083 3.917 14 C 0.578 3.422 15 O -0.589 6.589 16 C -0.020 4.020 17 C -0.171 4.171 18 C 0.059 3.941 19 Cl 0.030 6.970 20 N -0.267 5.267 21 C 0.066 3.934 22 N -0.237 5.237 23 H 0.072 0.928 24 H 0.021 0.979 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.171 0.829 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -11.361 -19.513 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.032 0.968 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.188 1.188 12 N -0.313 5.313 13 C -0.060 4.060 14 C 0.364 3.636 15 O -0.469 6.469 16 C -0.178 4.178 17 C -0.201 4.201 18 C -0.093 4.093 19 Cl 0.058 6.942 20 N -0.058 5.058 21 C -0.071 4.071 22 N -0.075 5.075 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.188 0.812 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.874 -11.710 -19.157 22.784 hybrid contribution 0.832 0.702 0.725 1.308 sum 4.706 -11.008 -18.432 21.979 Atomic orbital electron populations 1.21888 0.96670 1.00284 1.00209 1.18682 0.91937 0.92357 0.81215 0.96758 1.21520 1.32073 1.13059 0.91139 0.92516 1.25716 0.94983 0.95655 1.01896 1.70011 1.37103 1.23814 1.24525 0.85438 0.77870 0.79093 0.78502 1.20763 1.20235 1.18795 1.48126 1.47796 1.13490 1.21909 1.22109 1.00567 0.79760 1.03572 1.17445 0.78753 0.84977 0.82398 1.90705 1.58172 1.19868 1.78160 1.21616 1.04283 0.93785 0.98071 1.21539 1.03586 1.01842 0.93089 1.21833 1.00966 0.92057 0.94427 1.98403 1.68244 1.97664 1.29914 1.46191 1.29806 1.15559 1.14230 1.22801 1.06414 0.80985 0.96948 1.73778 1.19054 1.16056 0.98643 0.90911 0.95965 0.93309 0.92506 0.93637 0.87383 0.91017 0.81185 0.87056 0.86302 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.96 71.98 0.64 -5.96 16 2 C 0.26 14.24 2.62 44.25 0.12 14.35 16 3 H 0.01 0.93 6.91 -2.39 -0.02 0.91 16 4 C -0.54 -30.58 8.37 25.60 0.21 -30.37 16 5 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 12 N -0.58 -27.51 2.75 -830.34 -2.29 -29.80 16 13 C 0.08 3.08 9.04 127.77 1.15 4.24 16 14 C 0.58 27.22 7.68 86.75 0.67 27.89 16 15 O -0.59 -32.32 16.26 -3.94 -0.06 -32.38 16 16 C -0.02 -0.74 6.86 42.46 0.29 -0.45 16 17 C -0.17 -5.28 10.80 22.44 0.24 -5.04 16 18 C 0.06 1.36 7.44 83.57 0.62 1.98 16 19 Cl 0.03 0.48 28.67 -2.72 -0.08 0.40 16 20 N -0.27 -5.81 3.70 -359.15 -1.33 -7.14 16 21 C 0.07 0.64 11.14 127.77 1.42 2.06 16 22 N -0.24 -7.02 8.40 -48.18 -0.40 -7.43 16 23 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 2.21 6.67 -2.39 -0.02 2.20 16 26 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 3.49 5.02 -2.38 -0.01 3.48 16 29 H 0.07 2.62 6.44 -2.39 -0.02 2.61 16 30 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.62 7.72 -2.38 -0.02 0.60 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.95 295.57 5.07 -67.88 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.13 Total: 5.64 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.82 Total: 10.12 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.78 Total: -97.70 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.06 Total: -32.38 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -72.95 5.07 -67.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355146530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.760 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds