Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28464 * 124.88214 * 2 1 4 4 C 1.31799 * 110.11306 * 179.97438 * 3 2 1 5 5 C 1.47708 * 126.51370 * 179.97438 * 4 3 2 6 6 O 1.21572 * 120.00036 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00138 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00341 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47315 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.46869 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46901 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00323 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47035 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47210 * 120.00065 * 15 13 11 18 18 H 1.48492 * 109.47598 * 240.00276 * 15 13 11 19 19 C 1.41506 * 106.97417 * 359.97438 * 4 3 2 20 20 C 1.35058 * 124.88504 * 179.97438 * 2 1 3 21 21 Cl 1.73603 * 126.40314 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47017 * 90.03024 * 1 2 3 23 23 H 1.09005 * 109.46578 * 210.02413 * 1 2 3 24 24 H 1.09004 * 109.46992 * 330.02295 * 1 2 3 25 25 H 0.97002 * 119.99732 * 359.97438 * 7 5 4 26 26 H 1.09004 * 109.46877 * 300.00090 * 8 7 5 27 27 H 1.08994 * 109.47331 * 59.99563 * 8 7 5 28 28 H 1.08999 * 109.46602 * 299.99442 * 9 8 7 29 29 H 1.08994 * 109.47543 * 59.99368 * 9 8 7 30 30 H 1.08999 * 109.47274 * 299.99302 * 10 9 8 31 31 H 1.09003 * 109.47179 * 59.99784 * 10 9 8 32 32 H 0.96994 * 119.99871 * 179.97438 * 14 13 11 33 33 H 1.08001 * 127.25620 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4742 0.7178 0.0006 5 6 4.6266 1.6417 0.0002 6 8 5.7595 1.2005 0.0003 7 7 4.4224 2.9739 -0.0002 8 6 5.5654 3.8903 -0.0011 9 6 5.0611 5.3348 -0.0009 10 6 6.2549 6.2917 -0.0012 11 6 5.7581 7.7145 -0.0015 12 1 4.6971 7.9161 -0.0011 13 6 6.6582 8.7589 -0.0013 14 7 7.9503 8.5136 -0.0013 15 14 6.0425 10.5225 -0.0010 16 1 4.5575 10.5283 -0.0004 17 1 6.5402 11.2204 1.2117 18 1 6.5402 11.2209 -1.2133 19 6 3.5286 -0.6962 0.0015 20 6 2.2375 -1.1079 0.0005 21 17 1.6806 -2.7522 0.0019 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 3.5185 3.3260 -0.0007 26 1 6.1707 3.7170 0.8887 27 1 6.1699 3.7163 -0.8912 28 1 4.4557 5.5083 -0.8905 29 1 4.4568 5.5085 0.8894 30 1 6.8600 6.1180 0.8887 31 1 6.8595 6.1181 -0.8913 32 1 8.5835 9.2483 -0.0015 33 1 4.4127 -1.3164 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359972082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = 23.175800 kcal Electronic energy + Delta-G solvation = -17409.824305 eV Core-core repulsion = 14305.005278 eV Total energy + Delta-G solvation = -3104.819026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.03288 -39.20279 -37.33017 -35.40539 -33.93165 -33.27221 -31.34115 -30.69169 -28.15477 -26.54879 -23.88549 -22.35772 -21.85522 -20.64122 -19.85405 -18.23487 -16.87088 -16.66616 -16.39354 -15.40102 -15.20985 -14.62284 -14.48149 -14.40268 -13.90432 -13.52408 -13.32358 -13.11034 -12.49730 -12.27579 -12.11184 -11.81809 -11.69689 -11.14238 -10.90720 -10.71630 -10.56411 -10.13491 -9.84203 -9.52935 -9.40738 -9.35315 -9.08868 -8.75212 -8.35568 -6.00089 -4.02876 1.07724 1.23386 1.65952 2.13781 3.31372 3.35508 3.39096 3.40605 3.42961 3.92847 4.45989 4.57243 4.61547 4.80614 4.87906 5.09451 5.32580 5.35835 5.73390 5.80813 5.94408 6.08283 6.19423 6.47867 6.63018 6.85453 7.02475 7.35422 7.66279 7.76386 7.78846 7.99147 8.33363 8.40966 9.04095 9.61254 11.11309 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045958 B = 0.002768 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.107872 B =10114.095489 C =10692.153793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.275 5.275 3 N -0.239 5.239 4 C 0.000 4.000 5 C 0.597 3.403 6 O -0.532 6.532 7 N -0.710 5.710 8 C 0.116 3.884 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.151 4.151 20 C 0.046 3.954 21 Cl 0.001 6.999 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.405 0.595 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.050 -21.573 0.052 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.066 5.066 3 N -0.076 5.076 4 C -0.160 4.160 5 C 0.380 3.620 6 O -0.407 6.407 7 N -0.360 5.360 8 C -0.007 4.007 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.180 4.180 20 C -0.104 4.104 21 Cl 0.029 6.971 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.239 0.761 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.938 -21.005 0.053 26.983 hybrid contribution -0.411 0.275 -0.011 0.495 sum -17.348 -20.730 0.042 27.031 Atomic orbital electron populations 1.22306 0.72555 1.06002 1.05106 1.45480 1.08135 1.01599 1.51410 1.73718 1.03183 1.11836 1.18871 1.21992 0.90944 0.93786 1.09297 1.16794 0.86185 0.81797 0.77194 1.90812 1.22219 1.77161 1.50501 1.46072 1.11522 1.05167 1.73235 1.21735 0.87400 0.89217 1.02311 1.21895 1.01348 0.91631 1.01028 1.19040 0.91974 0.92701 0.97720 1.21248 0.92895 0.91084 1.50694 0.92583 1.25032 0.94888 0.99269 0.95325 1.69975 1.00874 1.31733 1.50729 0.86530 0.78937 0.84903 0.77580 1.19766 1.21019 1.21015 1.21493 0.95385 0.93960 1.07127 1.21899 0.91167 0.83644 1.13730 1.98402 1.89670 1.11635 1.97354 0.89076 0.88482 0.87662 0.76073 0.91393 0.91392 0.92636 0.92637 0.96196 0.96198 0.92992 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.14 59.85 0.67 1.05 16 2 N -0.28 -2.63 3.70 -64.87 -0.24 -2.87 16 3 N -0.24 -2.91 11.66 33.42 0.39 -2.52 16 4 C 0.00 0.00 7.13 -82.77 -0.59 -0.59 16 5 C 0.60 9.78 7.82 -12.39 -0.10 9.69 16 6 O -0.53 -10.30 16.93 5.30 0.09 -10.21 16 7 N -0.71 -11.14 5.55 -61.29 -0.34 -11.48 16 8 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 9 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.15 -1.79 10.80 -39.31 -0.42 -2.22 16 20 C 0.05 0.45 7.44 -17.10 -0.13 0.32 16 21 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 22 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.10 0.28 7.71 -51.93 -0.40 -0.12 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.40 5.58 8.20 -40.82 -0.33 5.25 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -33.21 310.63 -6.56 -39.77 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.08 Total: -1.03 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.29 Total: -5.22 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.55 Total: -43.08 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.21 -6.56 -39.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359972082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.945 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds