Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28464 * 124.88214 * 2 1 4 4 C 1.31799 * 110.11306 * 179.97438 * 3 2 1 5 5 C 1.47708 * 126.51370 * 179.97438 * 4 3 2 6 6 O 1.21572 * 120.00036 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00138 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00341 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47315 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.46869 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46901 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00323 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47035 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47210 * 120.00065 * 15 13 11 18 18 H 1.48492 * 109.47598 * 240.00276 * 15 13 11 19 19 C 1.41506 * 106.97417 * 359.97438 * 4 3 2 20 20 C 1.35058 * 124.88504 * 179.97438 * 2 1 3 21 21 Cl 1.73603 * 126.40314 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47017 * 90.03024 * 1 2 3 23 23 H 1.09005 * 109.46578 * 210.02413 * 1 2 3 24 24 H 1.09004 * 109.46992 * 330.02295 * 1 2 3 25 25 H 0.97002 * 119.99732 * 359.97438 * 7 5 4 26 26 H 1.09004 * 109.46877 * 300.00090 * 8 7 5 27 27 H 1.08994 * 109.47331 * 59.99563 * 8 7 5 28 28 H 1.08999 * 109.46602 * 299.99442 * 9 8 7 29 29 H 1.08994 * 109.47543 * 59.99368 * 9 8 7 30 30 H 1.08999 * 109.47274 * 299.99302 * 10 9 8 31 31 H 1.09003 * 109.47179 * 59.99784 * 10 9 8 32 32 H 0.96994 * 119.99871 * 179.97438 * 14 13 11 33 33 H 1.08001 * 127.25620 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4742 0.7178 0.0006 5 6 4.6266 1.6417 0.0002 6 8 5.7595 1.2005 0.0003 7 7 4.4224 2.9739 -0.0002 8 6 5.5654 3.8903 -0.0011 9 6 5.0611 5.3348 -0.0009 10 6 6.2549 6.2917 -0.0012 11 6 5.7581 7.7145 -0.0015 12 1 4.6971 7.9161 -0.0011 13 6 6.6582 8.7589 -0.0013 14 7 7.9503 8.5136 -0.0013 15 14 6.0425 10.5225 -0.0010 16 1 4.5575 10.5283 -0.0004 17 1 6.5402 11.2204 1.2117 18 1 6.5402 11.2209 -1.2133 19 6 3.5286 -0.6962 0.0015 20 6 2.2375 -1.1079 0.0005 21 17 1.6806 -2.7522 0.0019 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 3.5185 3.3260 -0.0007 26 1 6.1707 3.7170 0.8887 27 1 6.1699 3.7163 -0.8912 28 1 4.4557 5.5083 -0.8905 29 1 4.4568 5.5085 0.8894 30 1 6.8600 6.1180 0.8887 31 1 6.8595 6.1181 -0.8913 32 1 8.5835 9.2483 -0.0015 33 1 4.4127 -1.3164 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001359972082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = 0.215707 kcal Electronic energy + Delta-G solvation = -17410.819929 eV Core-core repulsion = 14305.005278 eV Total energy + Delta-G solvation = -3105.814651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.87953 -40.53081 -38.00928 -37.00117 -35.23135 -34.65249 -33.05097 -31.66417 -29.28108 -28.00180 -25.40513 -23.73938 -22.70600 -22.28995 -21.07880 -19.22556 -18.49341 -17.65891 -17.62758 -16.85865 -16.63218 -16.40676 -15.56576 -15.35419 -15.17264 -14.81700 -14.23903 -13.89213 -13.74978 -13.55432 -13.51874 -13.14506 -12.81733 -12.76907 -12.55489 -12.35129 -11.97929 -11.70593 -11.67820 -11.29215 -11.09873 -10.54760 -10.44035 -10.16504 -10.08142 -8.18444 -6.29617 0.29644 0.34192 0.72939 1.42502 1.42681 1.45452 1.56065 2.15434 2.21153 2.43571 3.08887 3.15408 3.78576 4.08188 4.16739 4.22025 4.27950 4.30439 4.43412 4.56107 4.60475 4.94934 4.95769 5.04010 5.17691 5.34011 5.38571 5.53485 5.72367 5.85727 6.23425 6.33805 6.64555 6.87880 7.07825 7.39817 8.93956 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045958 B = 0.002768 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.107872 B =10114.095489 C =10692.153793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.263 5.263 3 N -0.242 5.242 4 C -0.028 4.028 5 C 0.599 3.401 6 O -0.570 6.570 7 N -0.701 5.701 8 C 0.129 3.871 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.065 0.935 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.166 4.166 20 C 0.053 3.947 21 Cl 0.029 6.971 22 H 0.110 0.890 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.416 0.584 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.005 1.005 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.999 -21.947 0.040 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.055 5.055 3 N -0.081 5.081 4 C -0.186 4.186 5 C 0.384 3.616 6 O -0.448 6.448 7 N -0.352 5.352 8 C 0.005 3.995 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.195 4.195 20 C -0.098 4.098 21 Cl 0.057 6.943 22 H 0.129 0.871 23 H 0.137 0.863 24 H 0.135 0.865 25 H 0.253 0.747 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.938 -21.385 0.041 29.238 hybrid contribution 0.406 0.269 -0.009 0.487 sum -19.532 -21.116 0.032 28.765 Atomic orbital electron populations 1.22804 0.69656 1.07765 1.06962 1.45942 1.09612 1.00876 1.49084 1.73650 1.02651 1.12916 1.18888 1.21563 0.90810 0.93980 1.12213 1.17103 0.86574 0.81922 0.76041 1.90781 1.23984 1.77771 1.52226 1.45850 1.11302 1.04898 1.73156 1.21370 0.87943 0.88771 1.01402 1.21603 0.99074 0.91212 1.02110 1.18947 0.93503 0.93666 0.95285 1.21707 0.93473 0.92289 1.50305 0.91635 1.26019 0.94995 1.04291 0.94820 1.70115 1.02325 1.33314 1.51789 0.85364 0.79010 0.78818 0.77632 1.18265 1.20560 1.20550 1.21609 0.96680 0.93328 1.07919 1.21916 0.90659 0.84953 1.12276 1.98417 1.89267 1.09424 1.97165 0.87132 0.86284 0.86470 0.74739 0.92428 0.92426 0.91455 0.91454 0.98707 0.98712 0.92801 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.14 127.77 1.42 1.83 16 2 N -0.26 -4.41 3.70 -359.14 -1.33 -5.74 16 3 N -0.24 -5.54 11.66 -48.18 -0.56 -6.10 16 4 C -0.03 -0.76 7.13 42.46 0.30 -0.45 16 5 C 0.60 19.87 7.82 86.75 0.68 20.55 16 6 O -0.57 -22.79 16.93 -3.94 -0.07 -22.86 16 7 N -0.70 -21.95 5.55 -466.10 -2.59 -24.54 16 8 C 0.13 4.72 5.67 86.38 0.49 5.21 16 9 C -0.10 -4.05 5.27 30.59 0.16 -3.89 16 10 C 0.02 1.24 4.97 29.85 0.15 1.39 16 11 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 12 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 14 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C -0.17 -3.86 10.80 22.45 0.24 -3.61 16 20 C 0.05 0.94 7.44 83.57 0.62 1.56 16 21 Cl 0.03 0.35 28.67 -2.72 -0.08 0.28 16 22 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 23 H 0.12 0.24 7.71 -2.38 -0.02 0.23 16 24 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.42 11.08 8.20 -92.71 -0.76 10.32 16 26 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -72.35 310.63 2.82 -69.53 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.37 Total: 7.77 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.76 Total: -7.33 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -4.19 Total: -93.51 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.07 Total: -22.86 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.28 kcal Total: -72.35 2.82 -69.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359972082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.742 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds