Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46488 * 109.47008 * 2 1 4 4 C 1.36921 * 120.00046 * 264.31429 * 3 2 1 5 5 H 1.08000 * 119.99544 * 140.78990 * 4 3 2 6 6 C 1.39012 * 119.99882 * 320.79349 * 4 3 2 7 7 N 1.31384 * 120.00084 * 338.94536 * 6 4 3 8 8 Si 1.86805 * 119.99852 * 158.94459 * 6 4 3 9 9 H 1.48499 * 109.46966 * 89.99964 * 8 6 4 10 10 H 1.48498 * 109.47167 * 209.99891 * 8 6 4 11 11 H 1.48498 * 109.47102 * 329.99977 * 8 6 4 12 12 C 1.34782 * 120.00412 * 84.59514 * 3 2 1 13 13 O 1.21609 * 119.99447 * 354.92678 * 12 3 2 14 14 C 1.47559 * 120.00146 * 174.92720 * 12 3 2 15 15 N 1.31870 * 126.47261 * 354.44900 * 14 12 3 16 16 N 1.28473 * 110.13115 * 179.81756 * 15 14 12 17 17 C 1.46494 * 124.93254 * 180.21760 * 16 15 14 18 18 C 1.35664 * 110.13522 * 0.45842 * 16 15 14 19 19 C 1.50696 * 126.42383 * 179.70260 * 18 16 15 20 20 C 1.35444 * 107.14260 * 359.72476 * 18 16 15 21 21 Cl 1.73603 * 127.23366 * 180.02562 * 20 18 16 22 22 H 1.09004 * 109.47253 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47176 * 299.99894 * 1 2 3 24 24 H 1.09002 * 109.47135 * 59.99984 * 1 2 3 25 25 H 1.09004 * 109.46794 * 240.00011 * 2 1 3 26 26 H 1.08998 * 109.46954 * 120.00483 * 2 1 3 27 27 H 0.97010 * 119.99547 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.47136 * 270.27832 * 17 16 15 29 29 H 1.09006 * 109.47398 * 30.27116 * 17 16 15 30 30 H 1.09004 * 109.47200 * 150.27691 * 17 16 15 31 31 H 1.09001 * 109.47120 * 269.99866 * 19 18 16 32 32 H 1.09000 * 109.47505 * 29.99998 * 19 18 16 33 33 H 1.09001 * 109.47013 * 150.00364 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3572 1.9874 -1.1799 5 1 2.1115 3.0263 -1.3432 6 6 3.0175 1.2657 -2.1676 7 7 3.6769 0.1736 -1.8534 8 14 2.9673 1.8486 -3.9417 9 1 4.1095 2.7633 -4.1947 10 1 3.0601 0.6777 -4.8503 11 1 1.6924 2.5683 -4.1903 12 6 2.1393 2.0532 1.1620 13 8 1.7570 1.5472 2.1997 14 6 2.7355 3.4029 1.1751 15 7 3.2820 4.0284 0.1508 16 7 3.6984 5.1888 0.5123 17 6 4.3536 6.1573 -0.3701 18 6 3.4480 5.3848 1.8312 19 6 3.7892 6.6138 2.6337 20 6 2.8344 4.2684 2.2913 21 17 2.2842 3.9633 3.9093 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 4.1380 -0.3298 -2.5427 28 1 5.4309 5.9919 -0.3550 29 1 3.9811 6.0326 -1.3869 30 1 4.1364 7.1683 -0.0250 31 1 4.7858 6.5036 3.0612 32 1 3.7671 7.4893 1.9847 33 1 3.0615 6.7376 3.4358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434896479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = 48.586489 kcal Electronic energy + Delta-G solvation = -19249.753084 eV Core-core repulsion = 16146.035948 eV Total energy + Delta-G solvation = -3103.717136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.01133 -38.17341 -35.90899 -34.75313 -33.04693 -32.06465 -31.68580 -29.78833 -27.00753 -26.43768 -24.79182 -23.02051 -21.04994 -20.21399 -18.77589 -17.21722 -16.07226 -16.00793 -15.36742 -14.67706 -14.39887 -14.17163 -13.55089 -13.34340 -13.16768 -12.83773 -12.58465 -12.53131 -12.30206 -12.06730 -11.67163 -11.43048 -11.26928 -11.12075 -10.88194 -10.78595 -10.36211 -10.34243 -9.82731 -9.63967 -8.97452 -8.48600 -8.41955 -8.09889 -7.37649 -6.29676 -3.90843 2.27318 2.49824 2.63483 3.17603 3.24381 3.28317 3.32579 4.16542 4.54228 4.65957 4.82050 4.95494 5.12636 5.15556 5.24310 5.47307 5.55941 5.72336 5.85171 6.11149 6.14465 6.28841 6.48214 6.52922 6.82707 6.92026 7.10455 7.24113 7.42201 7.63236 8.02906 8.53960 8.59374 9.19417 9.60846 10.02922 10.73941 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.008443 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.573309 B = 3315.515679 C = 4619.592749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 N -0.419 5.419 4 C -0.311 4.311 5 H 0.101 0.899 6 C 0.044 3.956 7 N -0.860 5.860 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.536 3.464 13 O -0.587 6.587 14 C 0.038 3.962 15 N -0.209 5.209 16 N -0.300 5.300 17 C 0.094 3.906 18 C 0.000 4.000 19 C -0.078 4.078 20 C -0.111 4.111 21 Cl -0.028 7.028 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.267 0.733 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 11.568 2.489 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 N -0.137 5.137 4 C -0.440 4.440 5 H 0.118 0.882 6 C -0.162 4.162 7 N -0.497 5.497 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.323 3.677 13 O -0.471 6.471 14 C -0.124 4.124 15 N -0.042 5.042 16 N -0.089 5.089 17 C -0.047 4.047 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.149 4.149 21 Cl 0.000 7.000 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.313 11.084 1.794 11.304 hybrid contribution 0.047 0.349 -0.144 0.381 sum 1.360 11.433 1.650 11.631 Atomic orbital electron populations 1.22080 0.98114 1.00111 1.01432 1.21284 0.91789 0.84385 1.03073 1.43409 1.53628 1.11800 1.04869 1.19631 1.35756 0.97725 0.90932 0.88192 1.25374 0.94060 0.96391 1.00351 1.69988 1.28346 1.17520 1.33813 0.86187 0.78807 0.78326 0.82818 1.20416 1.20917 1.19427 1.17176 0.82815 0.83625 0.84090 1.90653 1.55006 1.69078 1.32365 1.22111 1.04369 0.97481 0.88433 1.74566 1.12635 0.92605 1.24378 1.45651 1.43683 1.12993 1.06576 1.22004 0.97963 0.89911 0.94818 1.20913 1.06405 0.98625 0.86503 1.20269 1.02706 0.91937 0.98668 1.20517 1.09852 0.95826 0.88742 1.98290 1.88432 1.95744 1.17514 0.93423 0.93148 0.93065 0.88394 0.92758 0.92245 0.90219 0.88542 0.89391 0.90626 0.91352 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.20 37.16 0.38 -3.01 16 2 C 0.12 2.93 5.56 -4.05 -0.02 2.90 16 3 N -0.42 -11.22 2.51 -115.99 -0.29 -11.51 16 4 C -0.31 -8.25 7.71 -14.99 -0.12 -8.36 16 5 H 0.10 2.65 6.36 -52.49 -0.33 2.31 16 6 C 0.04 1.14 4.89 -17.46 -0.09 1.06 16 7 N -0.86 -23.31 11.66 55.50 0.65 -22.66 16 8 Si 0.91 19.94 29.60 -169.99 -5.03 14.91 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 12 C 0.54 14.38 7.59 -12.46 -0.09 14.29 16 13 O -0.59 -16.35 15.53 5.27 0.08 -16.27 16 14 C 0.04 0.91 6.82 -82.77 -0.56 0.35 16 15 N -0.21 -4.69 8.95 33.41 0.30 -4.39 16 16 N -0.30 -5.23 3.72 -63.68 -0.24 -5.46 16 17 C 0.09 1.06 11.12 59.84 0.67 1.72 16 18 C 0.00 0.00 6.94 -81.90 -0.57 -0.57 16 19 C -0.08 -0.86 9.99 36.00 0.36 -0.50 16 20 C -0.11 -2.30 6.79 -39.30 -0.27 -2.56 16 21 Cl -0.03 -0.54 27.94 -51.86 -1.45 -1.99 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.05 1.11 8.05 -51.93 -0.42 0.69 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 2.52 5.72 -51.93 -0.30 2.22 16 26 H 0.05 1.38 7.67 -51.93 -0.40 0.98 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 0.67 6.98 -51.93 -0.36 0.31 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.57 7.02 -51.93 -0.36 0.20 16 33 H 0.08 0.87 8.03 -51.93 -0.42 0.46 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -32.60 297.68 -5.65 -38.25 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.84 Total: -0.68 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.31 Total: 5.33 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.42 Total: -44.03 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.08 Total: -16.27 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.45 Total: -1.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.60 -5.65 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434896479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.836 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds