Wall clock time and date at job start Mon Mar 30 2020 01:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34238 * 125.74057 * 2 1 4 4 C 1.38068 * 107.44058 * 179.97438 * 3 2 1 5 5 C 1.47386 * 126.42245 * 179.97438 * 4 3 2 6 6 O 1.21610 * 119.99819 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99922 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99614 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46851 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47298 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47210 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00318 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99926 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99816 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47049 * 89.99983 * 15 13 11 17 17 H 1.48496 * 109.46789 * 209.99372 * 15 13 11 18 18 H 1.48493 * 109.47414 * 329.99794 * 15 13 11 19 19 C 1.41395 * 107.15241 * 0.26153 * 4 3 2 20 20 Cl 1.73600 * 126.00140 * 179.71823 * 19 4 3 21 21 N 1.30532 * 107.99170 * 359.55557 * 19 4 3 22 22 H 1.09006 * 109.47146 * 90.00209 * 1 2 3 23 23 H 1.09006 * 109.47527 * 210.00335 * 1 2 3 24 24 H 1.08996 * 109.47535 * 330.00273 * 1 2 3 25 25 H 1.08001 * 126.27688 * 0.02562 * 3 2 1 26 26 H 0.96996 * 119.99887 * 359.97438 * 7 5 4 27 27 H 1.09000 * 109.47287 * 299.99298 * 8 7 5 28 28 H 1.09002 * 109.47320 * 59.99900 * 8 7 5 29 29 H 1.09001 * 109.47671 * 299.99654 * 9 8 7 30 30 H 1.09006 * 109.47297 * 59.99934 * 9 8 7 31 31 H 1.09001 * 109.46675 * 300.00507 * 10 9 8 32 32 H 1.08994 * 109.47046 * 60.00071 * 10 9 8 33 33 H 0.97005 * 119.99644 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5599 0.6560 0.0006 5 6 4.7631 1.5073 0.0003 6 8 5.8677 0.9986 0.0013 7 7 4.6391 2.8493 -0.0002 8 6 5.8351 3.6953 -0.0010 9 6 5.4183 5.1675 -0.0020 10 6 6.6674 6.0512 -0.0023 11 6 6.2569 7.5011 -0.0026 12 1 5.2099 7.7660 -0.0022 13 6 7.2180 8.4897 -0.0034 14 7 8.4930 8.1672 -0.0034 15 14 6.7092 10.2871 -0.0046 16 1 6.5746 10.7643 1.3952 17 1 7.7410 11.0931 -0.7052 18 1 5.4077 10.4327 -0.7045 19 6 3.5316 -0.7576 -0.0052 20 17 4.9153 -1.8059 -0.0139 21 7 2.2823 -1.1359 0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.9156 2.1168 0.0004 26 1 3.7580 3.2549 -0.0006 27 1 6.4288 3.4861 0.8888 28 1 6.4280 3.4853 -0.8912 29 1 4.8248 5.3766 -0.8920 30 1 4.8251 5.3778 0.8880 31 1 7.2606 5.8419 0.8879 32 1 7.2609 5.8410 -0.8920 33 1 9.1692 8.8627 -0.0036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435091763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:12 Heat of formation + Delta-G solvation = -2.999843 kcal Electronic energy + Delta-G solvation = -17521.686510 eV Core-core repulsion = 14415.732423 eV Total energy + Delta-G solvation = -3105.954087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.53429 -40.20095 -37.83141 -36.85727 -35.14714 -34.23434 -33.17316 -31.55373 -28.65721 -27.78540 -25.23180 -23.53259 -22.35613 -22.07489 -21.09548 -18.99928 -18.40211 -17.27198 -16.99158 -16.64153 -16.40999 -16.37579 -16.02111 -15.16864 -14.97192 -14.53338 -14.21729 -14.11951 -13.69693 -13.51532 -13.42537 -12.72104 -12.65190 -12.61705 -12.49196 -12.32977 -11.90747 -11.60786 -11.53939 -11.19753 -10.84007 -10.53559 -10.51898 -10.13690 -9.74613 -8.15982 -6.27329 0.38155 0.39940 0.73688 1.44489 1.45831 1.56647 1.72695 2.29255 2.36917 2.46208 3.18081 3.35394 3.73649 4.11315 4.16493 4.29845 4.31494 4.45620 4.46815 4.62501 4.75524 4.77388 5.01852 5.08447 5.23811 5.49538 5.58340 5.72911 5.76641 5.88917 6.14658 6.26108 6.68624 6.91169 7.34803 7.42391 8.96202 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030407 B = 0.003190 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.605154 B = 8775.738009 C = 9665.279221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.339 5.339 3 C 0.144 3.856 4 C -0.307 4.307 5 C 0.584 3.416 6 O -0.578 6.578 7 N -0.708 5.708 8 C 0.132 3.868 9 C -0.100 4.100 10 C 0.022 3.978 11 C -0.538 4.538 12 H 0.070 0.930 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.258 1.258 19 C 0.152 3.848 20 Cl 0.014 6.986 21 N -0.310 5.310 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.134 0.866 25 H 0.245 0.755 26 H 0.415 0.585 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.071 0.929 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 -14.941 0.060 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.118 5.118 3 C -0.009 4.009 4 C -0.322 4.322 5 C 0.371 3.629 6 O -0.459 6.459 7 N -0.360 5.360 8 C 0.008 3.992 9 C -0.138 4.138 10 C -0.016 4.016 11 C -0.576 4.576 12 H 0.088 0.912 13 C -0.203 4.203 14 N -0.577 5.577 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.182 1.182 19 C -0.040 4.040 20 Cl 0.042 6.958 21 N -0.135 5.135 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.153 0.847 25 H 0.261 0.739 26 H 0.252 0.748 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.548 -16.331 0.059 27.038 hybrid contribution 0.959 1.383 -0.010 1.683 sum -20.589 -14.948 0.049 25.443 Atomic orbital electron populations 1.22639 0.69325 1.07444 1.06105 1.48669 1.08731 1.02174 1.52253 1.23831 0.87812 0.95974 0.93317 1.20124 0.94382 0.91779 1.25953 1.17487 0.87669 0.82074 0.75624 1.90792 1.28414 1.74559 1.52086 1.45653 1.10522 1.04766 1.75037 1.21215 0.87169 0.90123 1.00643 1.21590 0.98892 0.90916 1.02388 1.18959 0.93541 0.94136 0.94978 1.21705 0.93468 0.92303 1.50154 0.91230 1.26042 0.94885 1.04444 0.94908 1.70124 1.01040 1.34696 1.51872 0.85416 0.78315 0.78715 0.78397 1.19895 1.21343 1.18163 1.22813 0.89572 0.90683 1.00957 1.98413 1.35685 1.65174 1.96575 1.77174 0.99895 1.09628 1.26849 0.88073 0.88328 0.84741 0.73877 0.74819 0.93355 0.93371 0.91018 0.91002 0.99118 0.99104 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.19 11.44 127.77 1.46 1.66 16 2 N -0.34 -4.62 3.98 -367.78 -1.46 -6.08 16 3 C 0.14 1.87 10.99 84.28 0.93 2.80 16 4 C -0.31 -7.42 6.13 -20.13 -0.12 -7.54 16 5 C 0.58 17.85 7.81 86.65 0.68 18.53 16 6 O -0.58 -23.05 15.72 -4.06 -0.06 -23.11 16 7 N -0.71 -18.58 5.54 -466.42 -2.59 -21.16 16 8 C 0.13 4.56 5.67 86.38 0.49 5.05 16 9 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 10 C 0.02 1.10 4.97 29.85 0.15 1.25 16 11 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 13 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 14 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 15 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.15 4.11 7.88 85.66 0.67 4.78 16 20 Cl 0.01 0.39 28.00 -2.72 -0.08 0.32 16 21 N -0.31 -7.17 12.50 -48.95 -0.61 -7.78 16 22 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 23 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 24 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.25 0.40 7.46 -2.91 -0.02 0.38 16 26 H 0.41 7.07 7.39 -92.71 -0.69 6.39 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -80.25 308.80 3.07 -77.18 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: 0.45 Total: -1.75 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.11 Total: -5.93 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -4.38 Total: -91.79 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.32 kcal Total: -80.25 3.07 -77.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435091763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.184 kcal (2) G-P(sol) polarization free energy of solvation -80.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds