Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47239 * 48.47428 * 3 2 1 5 5 C 1.36565 * 119.99914 * 278.68498 * 4 3 2 6 6 H 1.07996 * 119.99934 * 253.03595 * 5 4 3 7 7 C 1.39237 * 119.99578 * 73.03761 * 5 4 3 8 8 N 1.31245 * 119.99940 * 64.10477 * 7 5 4 9 9 Si 1.86802 * 119.99849 * 244.09520 * 7 5 4 10 10 H 1.48506 * 109.46941 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46905 * 119.99954 * 9 7 5 12 12 H 1.48491 * 109.47191 * 240.00484 * 9 7 5 13 13 C 1.34772 * 120.00041 * 98.68513 * 4 3 2 14 14 O 1.21675 * 120.00071 * 182.54065 * 13 4 3 15 15 C 1.47219 * 120.00206 * 2.54670 * 13 4 3 16 16 C 1.38112 * 120.67642 * 333.22462 * 15 13 4 17 17 C 1.40006 * 119.10340 * 179.97438 * 16 15 13 18 18 N 1.31193 * 120.47476 * 359.97438 * 17 16 15 19 19 C 1.33692 * 121.37072 * 0.02562 * 18 17 16 20 20 C 1.39098 * 132.47921 * 180.02562 * 19 18 17 21 21 C 1.38516 * 107.66896 * 179.97438 * 20 19 18 22 22 N 1.31503 * 109.03840 * 359.97438 * 21 20 19 23 23 N 1.37272 * 120.74211 * 359.97438 * 19 18 17 24 24 H 1.08997 * 109.47197 * 288.46935 * 3 2 1 25 25 H 1.08999 * 109.46826 * 168.47664 * 3 2 1 26 26 H 0.97003 * 119.99575 * 180.02562 * 8 7 5 27 27 H 1.07994 * 120.44398 * 0.02562 * 16 15 13 28 28 H 1.07995 * 119.75685 * 180.02562 * 17 16 15 29 29 H 1.08003 * 126.15920 * 359.93372 * 20 19 18 30 30 H 1.08009 * 125.48540 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9148 -1.0341 5 6 3.1566 -2.2563 -0.7855 6 1 4.1122 -2.7342 -0.6280 7 6 1.9856 -3.0078 -0.7351 8 7 1.2416 -3.1363 -1.8087 9 14 1.4736 -3.8335 0.8604 10 1 2.4758 -3.5364 1.9153 11 1 0.1458 -3.3181 1.2806 12 1 1.3920 -5.3017 0.6540 13 6 3.4874 -0.4331 -2.2306 14 8 3.8496 -1.1974 -3.1053 15 6 3.4759 1.0179 -2.4793 16 6 2.6074 1.8437 -1.7928 17 6 2.6249 3.2189 -2.0550 18 7 3.4551 3.7170 -2.9403 19 6 4.3038 2.9353 -3.6156 20 6 5.2637 3.2080 -4.5846 21 6 5.8562 2.0072 -4.9390 22 7 5.3092 1.0363 -4.2409 23 7 4.3318 1.5798 -3.4005 24 1 2.9715 -0.3247 0.9747 25 1 2.9708 1.0078 -0.2053 26 1 0.4255 -3.6595 -1.7734 27 1 1.9247 1.4342 -1.0631 28 1 1.9506 3.8743 -1.5239 29 1 5.5033 4.1807 -4.9882 30 1 6.6413 1.8874 -5.6711 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442980243.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = 149.534941 kcal Electronic energy + Delta-G solvation = -20239.443619 eV Core-core repulsion = 17038.996442 eV Total energy + Delta-G solvation = -3200.447177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.35940 -40.86606 -38.91042 -37.98242 -36.33642 -35.19123 -34.30833 -32.18737 -30.28344 -29.23083 -27.81489 -25.71010 -24.43523 -23.24020 -21.28031 -19.80351 -19.08849 -18.98800 -18.59534 -17.66876 -17.17903 -16.89987 -16.75714 -15.97125 -15.66776 -15.35851 -15.03287 -14.65018 -14.18540 -14.10053 -13.94473 -13.75228 -13.72457 -13.47128 -13.42736 -12.64484 -12.60156 -12.17808 -12.08655 -11.88539 -11.33401 -10.77642 -10.60650 -10.37855 -9.65579 -8.98897 -8.70659 -6.26908 -0.89914 -0.19773 0.87306 1.19234 1.42181 1.47476 1.55789 1.61073 1.66388 2.02246 2.18240 2.37605 2.42257 2.54207 2.89932 3.11213 3.25371 3.51098 3.77203 3.96203 4.14544 4.24160 4.33646 4.44294 4.65896 4.84140 5.00255 5.26856 5.33835 5.52408 6.31464 6.42354 6.44235 6.49622 6.55017 7.00728 7.02225 7.86859 8.15117 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028037 B = 0.006660 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.424730 B = 4203.421665 C = 4909.805420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.209 3.791 3 C 0.155 3.845 4 N -0.423 5.423 5 C -0.461 4.461 6 H 0.073 0.927 7 C 0.101 3.899 8 N -0.778 5.778 9 Si 0.902 3.098 10 H -0.228 1.228 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.497 3.503 14 O -0.554 6.554 15 C 0.138 3.862 16 C -0.207 4.207 17 C 0.196 3.804 18 N -0.464 5.464 19 C 0.225 3.775 20 C -0.259 4.259 21 C 0.080 3.920 22 N -0.339 5.339 23 N -0.307 5.307 24 H 0.157 0.843 25 H 0.161 0.839 26 H 0.277 0.723 27 H 0.192 0.808 28 H 0.242 0.758 29 H 0.194 0.806 30 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 14.161 4.061 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.110 4.110 3 C 0.030 3.970 4 N -0.145 5.145 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.123 4.123 8 N -0.402 5.402 9 Si 0.722 3.278 10 H -0.149 1.149 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.432 6.432 15 C 0.018 3.982 16 C -0.231 4.231 17 C 0.012 3.988 18 N -0.175 5.175 19 C -0.001 4.001 20 C -0.289 4.289 21 C -0.098 4.098 22 N -0.163 5.163 23 N -0.080 5.080 24 H 0.175 0.825 25 H 0.177 0.823 26 H 0.088 0.912 27 H 0.209 0.791 28 H 0.258 0.742 29 H 0.211 0.789 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.966 13.248 3.252 13.783 hybrid contribution -0.140 -1.180 0.030 1.188 sum 1.827 12.069 3.282 12.640 Atomic orbital electron populations 1.81114 1.14181 1.09237 1.09247 1.30230 0.96252 0.92218 0.92272 1.20715 0.79460 0.98995 0.97799 1.43006 1.57158 1.06468 1.07842 1.18318 0.93172 0.83522 1.63247 0.90964 1.26381 0.95534 0.93394 0.97004 1.70790 1.12324 1.27689 1.29360 0.86454 0.79190 0.78442 0.83751 1.14944 1.20336 1.20417 1.19377 0.82204 0.85045 0.84898 1.90747 1.49112 1.59212 1.44145 1.21622 0.91223 0.95856 0.89453 1.23426 1.01002 0.95613 1.03091 1.24224 0.92446 0.92326 0.89851 1.68029 1.05611 1.35491 1.08407 1.21454 0.99299 0.79535 0.99840 1.21447 1.01989 1.01430 1.04052 1.24679 0.98488 0.89348 0.97268 1.78277 1.05638 1.22706 1.09721 1.47349 1.25513 1.08313 1.26823 0.82529 0.82276 0.91179 0.79126 0.74218 0.78896 0.74771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.43 18.54 20.01 0.37 -17.06 16 2 C 0.21 7.10 12.90 89.44 1.15 8.25 16 3 C 0.16 4.69 5.38 84.57 0.46 5.15 16 4 N -0.42 -18.83 2.52 -649.45 -1.63 -20.46 16 5 C -0.46 -23.50 8.17 84.20 0.69 -22.82 16 6 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 7 C 0.10 5.04 4.64 85.02 0.39 5.44 16 8 N -0.78 -42.54 13.95 21.71 0.30 -42.24 16 9 Si 0.90 36.87 29.69 68.60 2.04 38.91 16 10 H -0.23 -8.41 7.11 99.48 0.71 -7.70 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 13 C 0.50 24.35 7.50 86.60 0.65 25.00 16 14 O -0.55 -33.52 16.40 -4.27 -0.07 -33.59 16 15 C 0.14 5.41 6.53 40.55 0.26 5.68 16 16 C -0.21 -5.72 7.58 22.67 0.17 -5.55 16 17 C 0.20 4.16 11.25 85.22 0.96 5.12 16 18 N -0.46 -12.67 10.43 -192.70 -2.01 -14.68 16 19 C 0.22 7.40 7.93 133.24 1.06 8.46 16 20 C -0.26 -7.13 10.91 22.54 0.25 -6.88 16 21 C 0.08 2.35 11.93 84.81 1.01 3.36 16 22 N -0.34 -14.06 11.98 -57.55 -0.69 -14.75 16 23 N -0.31 -12.23 3.93 -181.28 -0.71 -12.95 16 24 H 0.16 3.70 8.11 -2.39 -0.02 3.68 16 25 H 0.16 3.56 4.21 -2.39 -0.01 3.55 16 26 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.19 4.80 2.93 -2.91 -0.01 4.79 16 28 H 0.24 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.24 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -81.19 279.29 5.86 -75.33 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.22 Total: 10.29 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.05 Total: 31.20 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -4.37 Total: -122.15 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.07 Total: -33.59 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.04 Total: 38.91 kcal Total: -81.19 5.86 -75.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442980243.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.864 kcal (2) G-P(sol) polarization free energy of solvation -81.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds