Wall clock time and date at job start Mon Mar 30 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.50696 * 109.47110 * 179.97438 * 4 3 2 6 6 N 1.34488 * 126.28574 * 90.00380 * 5 4 3 7 7 C 1.31135 * 105.61616 * 179.97438 * 6 5 4 8 8 O 1.33639 * 106.89692 * 359.97438 * 7 6 5 9 9 N 1.21302 * 109.80987 * 359.74023 * 8 7 6 10 10 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 11 11 O 1.21281 * 120.00220 * 179.72597 * 10 2 1 12 12 C 1.50706 * 120.00080 * 359.72107 * 10 2 1 13 13 S 1.80989 * 109.47203 * 180.02562 * 12 10 2 14 14 C 1.76206 * 100.00010 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99621 * 359.97438 * 14 13 12 16 16 C 1.38794 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99992 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46840 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47269 * 119.99682 * 18 16 14 21 21 H 1.48497 * 109.47235 * 239.99840 * 18 16 14 22 22 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 23 23 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 24 24 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 25 25 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 26 26 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 27 27 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 28 28 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 29 29 H 1.08000 * 126.55290 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46762 * 300.00389 * 12 10 2 31 31 H 1.08998 * 109.46924 * 59.99727 * 12 10 2 32 32 H 0.97004 * 119.99966 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 7 2.6662 4.2467 1.4425 7 6 3.6808 5.0774 1.4431 8 8 4.7914 4.3341 1.4441 9 7 4.4982 3.1570 1.4492 10 6 2.1389 -1.1671 -0.0057 11 8 3.3517 -1.1672 -0.0107 12 6 1.3854 -2.4723 -0.0057 13 16 2.5615 -3.8480 -0.0133 14 6 1.4414 -5.2082 -0.0128 15 1 0.3761 -5.0304 -0.0083 16 6 1.9281 -6.5080 -0.0173 17 7 3.2265 -6.7246 -0.0224 18 14 0.7407 -7.9500 -0.0161 19 1 -0.6548 -7.4421 -0.0107 20 1 0.9620 -8.7746 -1.2311 21 1 0.9707 -8.7797 1.1938 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0285 -0.5138 27 1 1.5001 1.8407 1.9564 28 1 3.0416 0.9507 1.9564 29 1 3.6289 6.1562 1.4429 30 1 0.7624 -2.5322 0.8867 31 1 0.7550 -2.5278 -0.8932 32 1 3.5666 -7.6330 -0.0259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456202112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:51 Heat of formation + Delta-G solvation = 8.957662 kcal Electronic energy + Delta-G solvation = -17693.184499 eV Core-core repulsion = 14589.792634 eV Total energy + Delta-G solvation = -3103.391865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.65700 -40.93311 -37.59730 -36.54064 -34.58984 -34.16156 -32.36036 -30.28991 -27.75883 -27.69314 -25.62612 -24.94761 -22.97628 -20.70968 -19.58038 -19.10424 -18.86525 -18.08490 -17.35759 -16.89460 -16.84134 -16.62833 -15.92516 -15.10295 -14.93203 -14.56795 -14.44547 -14.04607 -13.70173 -13.53268 -13.44851 -13.18951 -13.12362 -12.91643 -12.61095 -12.58198 -12.31665 -12.02276 -11.70150 -11.19151 -11.16273 -10.95275 -10.26752 -9.80609 -8.68680 -8.35032 -6.13820 0.29772 1.16120 1.26555 1.41662 1.45682 1.53719 1.57282 2.01961 2.26268 2.27551 2.81891 2.99295 3.14505 3.25967 3.66990 3.91821 3.99317 4.09102 4.21860 4.32587 4.43515 4.47930 4.59250 4.68905 4.82956 4.87359 4.95819 5.06039 5.41740 5.46014 6.18940 6.21061 7.06161 7.08642 7.24533 8.74538 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.047791 B = 0.003295 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.749479 B = 8495.318997 C = 8920.765329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.132 3.868 4 C -0.040 4.040 5 C 0.162 3.838 6 N -0.508 5.508 7 C 0.183 3.817 8 O 0.077 5.923 9 N -0.414 5.414 10 C 0.529 3.471 11 O -0.564 6.564 12 C -0.122 4.122 13 S -0.158 6.158 14 C -0.543 4.543 15 H 0.085 0.915 16 C 0.011 3.989 17 N -0.912 5.912 18 Si 1.001 2.999 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.274 1.274 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.322 0.678 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 24.771 2.117 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.008 3.992 4 C -0.080 4.080 5 C -0.110 4.110 6 N -0.240 5.240 7 C -0.057 4.057 8 O 0.018 5.982 9 N -0.121 5.121 10 C 0.316 3.684 11 O -0.442 6.442 12 C -0.273 4.273 13 S 0.069 5.931 14 C -0.690 4.690 15 H 0.103 0.897 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.822 3.178 19 H -0.178 1.178 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.336 0.664 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.033 23.862 2.115 24.704 hybrid contribution -1.379 -0.809 0.041 1.600 sum -7.413 23.053 2.157 24.311 Atomic orbital electron populations 1.22177 0.76186 1.05159 1.03720 1.47825 1.08800 1.04123 1.73622 1.21271 0.97807 0.85119 0.95018 1.20254 1.00328 0.87950 0.99457 1.25770 0.87338 0.96510 1.01414 1.71869 1.31970 0.99147 1.21027 1.31772 0.77755 1.03704 0.92421 1.85299 1.36708 1.11339 1.64900 1.74790 1.18062 0.97815 1.21447 1.20273 0.87306 0.85643 0.75130 1.90702 1.15848 1.87490 1.50192 1.23375 1.02646 0.94610 1.06684 1.85657 1.12880 0.97542 1.97043 1.23220 0.94615 0.92483 1.58717 0.89728 1.26164 0.97619 1.01784 0.93748 1.70201 1.14186 1.22410 1.48112 0.84876 0.78207 0.76648 0.78024 1.17811 1.19993 1.19984 0.90816 0.90277 0.87790 0.92556 0.86893 0.86280 0.91331 0.66399 0.87003 0.87203 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.24 127.77 1.31 2.45 16 2 N -0.61 -16.26 2.87 -846.74 -2.43 -18.69 16 3 C 0.13 3.22 5.39 86.38 0.47 3.69 16 4 C -0.04 -0.94 6.17 29.85 0.18 -0.76 16 5 C 0.16 3.83 7.47 138.46 1.03 4.87 16 6 N -0.51 -9.06 11.55 -315.38 -3.64 -12.70 16 7 C 0.18 1.80 13.40 130.51 1.75 3.55 16 8 O 0.08 1.40 11.31 74.87 0.85 2.24 16 9 N -0.41 -10.89 12.16 -60.39 -0.73 -11.63 16 10 C 0.53 20.32 7.69 87.66 0.67 21.00 16 11 O -0.56 -27.37 15.44 -3.03 -0.05 -27.42 16 12 C -0.12 -4.91 4.71 71.24 0.34 -4.57 16 13 S -0.16 -8.95 20.57 -56.49 -1.16 -10.11 16 14 C -0.54 -31.10 9.50 67.95 0.65 -30.46 16 15 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 16 C 0.01 0.65 5.49 84.86 0.47 1.12 16 17 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 18 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 19 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.33 6.45 -2.39 -0.02 1.32 16 24 H 0.10 1.08 8.07 -2.38 -0.02 1.06 16 25 H 0.06 1.75 7.41 -2.39 -0.02 1.74 16 26 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.32 -1.57 8.06 -2.91 -0.02 -1.59 16 30 H 0.11 4.00 7.41 -2.39 -0.02 3.98 16 31 H 0.11 3.97 8.10 -2.40 -0.02 3.95 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -85.76 302.18 3.14 -82.62 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.14 Total: 5.42 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.86 Total: 0.88 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -6.52 Total: -99.38 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.80 Total: -25.18 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.11 kcal Total: -85.76 3.14 -82.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456202112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.579 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds