Wall clock time and date at job start Mon Mar 30 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46995 * 79.67046 * 3 2 1 5 5 C 1.36743 * 120.00269 * 262.54804 * 4 3 2 6 6 H 1.08003 * 119.99881 * 207.50209 * 5 4 3 7 7 C 1.39128 * 119.99943 * 27.49868 * 5 4 3 8 8 N 1.31305 * 120.00071 * 26.32354 * 7 5 4 9 9 Si 1.86802 * 120.00057 * 206.32092 * 7 5 4 10 10 H 1.48502 * 109.47142 * 59.99961 * 9 7 5 11 11 H 1.48500 * 109.47100 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47103 * 300.00226 * 9 7 5 13 13 C 1.34785 * 119.99613 * 82.54798 * 4 3 2 14 14 O 1.21580 * 119.99516 * 181.68198 * 13 4 3 15 15 C 1.47927 * 120.00095 * 1.68329 * 13 4 3 16 16 C 1.39932 * 119.38392 * 172.29106 * 15 13 4 17 17 C 1.36914 * 119.60279 * 180.02562 * 16 15 13 18 18 C 1.39860 * 118.26617 * 0.02562 * 17 16 15 19 19 N 1.34641 * 134.98280 * 180.02562 * 18 17 16 20 20 N 1.28679 * 109.16040 * 179.97438 * 19 18 17 21 21 N 1.28774 * 111.83972 * 0.02562 * 20 19 18 22 22 H 0.96998 * 125.85514 * 180.02562 * 21 20 19 23 23 C 1.37244 * 108.27771 * 359.97438 * 21 20 19 24 24 N 1.31971 * 134.69176 * 180.02562 * 23 21 20 25 25 H 4.40645 * 5.51406 * 180.02562 * 4 1 2 26 26 H 1.08992 * 109.47185 * 319.66991 * 3 2 1 27 27 H 1.08998 * 109.46575 * 199.66917 * 3 2 1 28 28 H 0.96997 * 120.00317 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.19251 * 0.04345 * 16 15 13 30 30 H 1.08000 * 120.86499 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.2468 -1.3588 5 6 3.5078 -1.5082 -1.7321 6 1 4.2476 -1.6454 -2.5070 7 6 2.9346 -2.6149 -1.1138 8 7 1.7353 -2.5247 -0.5868 9 14 3.8712 -4.2291 -1.0332 10 1 5.1448 -4.0263 -0.2969 11 1 3.0484 -5.2442 -0.3276 12 1 4.1654 -4.7000 -2.4105 13 6 3.2159 0.7690 -2.2410 14 8 3.5922 0.5581 -3.3777 15 6 2.8475 2.1403 -1.8262 16 6 3.0890 3.2091 -2.6965 17 6 2.7502 4.4802 -2.3169 18 6 2.1692 4.6628 -1.0579 19 7 1.7186 5.7240 -0.3624 20 7 1.2693 5.3236 0.7750 21 7 1.3811 4.0481 0.9122 22 1 1.1070 3.5339 1.6877 23 6 1.9533 3.5411 -0.2276 24 7 2.2965 2.3340 -0.6359 25 1 -1.0500 0.0002 -0.0001 26 1 3.0098 -0.7825 0.6650 27 1 3.0089 0.9685 0.3459 28 1 1.3359 -3.2962 -0.1554 29 1 3.5396 3.0323 -3.6619 30 1 2.9279 5.3200 -2.9722 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467389127.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:23 Heat of formation + Delta-G solvation = 162.631296 kcal Electronic energy + Delta-G solvation = -20162.956590 eV Core-core repulsion = 16963.077314 eV Total energy + Delta-G solvation = -3199.879276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.40984 -41.19718 -39.21211 -37.18313 -35.34232 -34.15058 -33.07368 -32.76393 -31.89606 -28.29645 -27.52777 -25.91211 -24.80365 -23.74549 -21.92540 -19.86770 -19.63190 -19.43915 -18.77592 -18.15573 -17.60425 -16.91564 -16.38413 -15.98901 -15.96830 -15.18450 -14.83204 -14.47046 -14.17997 -13.88938 -13.76816 -13.57682 -13.43828 -12.90727 -12.72406 -12.67879 -12.53651 -12.17013 -11.23647 -11.12825 -10.78006 -10.73152 -10.30063 -10.20170 -9.98172 -9.81597 -8.42775 -6.02234 -0.93430 -0.05089 1.00413 1.12201 1.41685 1.45673 1.55072 1.83488 2.09590 2.32211 2.45847 2.64397 2.67415 2.93700 3.05336 3.26865 3.42684 3.76777 3.88922 3.98645 4.31023 4.37097 4.77219 4.78811 4.85334 4.97991 5.30905 5.40155 5.42820 5.62623 6.00242 6.27848 6.45705 7.00960 7.03745 7.21400 7.26403 7.87032 8.53426 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.006156 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.044622 B = 4547.327989 C = 5221.981618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.116 4.116 3 C 0.230 3.770 4 N -0.406 5.406 5 C -0.359 4.359 6 H 0.086 0.914 7 C 0.013 3.987 8 N -0.844 5.844 9 Si 0.987 3.013 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.273 1.273 13 C 0.465 3.535 14 O -0.612 6.612 15 C 0.155 3.845 16 C -0.127 4.127 17 C 0.012 3.988 18 C -0.047 4.047 19 N -0.254 5.254 20 N 0.001 4.999 21 N -0.388 5.388 22 H 0.470 0.530 23 C 0.205 3.795 24 N -0.453 5.453 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.278 0.722 29 H 0.169 0.831 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 9.379 4.720 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.118 4.118 3 C 0.107 3.893 4 N -0.120 5.120 5 C -0.487 4.487 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.477 5.477 9 Si 0.809 3.191 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.198 1.198 13 C 0.255 3.745 14 O -0.500 6.500 15 C 0.003 3.997 16 C -0.151 4.151 17 C -0.018 4.018 18 C -0.175 4.175 19 N -0.131 5.131 20 N 0.017 4.983 21 N -0.122 5.122 22 H 0.321 0.679 23 C -0.039 4.039 24 N -0.171 5.171 25 H 0.239 0.761 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.187 0.813 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.885 9.820 5.519 11.299 hybrid contribution 0.135 -1.783 -0.378 1.828 sum -0.751 8.036 5.141 9.569 Atomic orbital electron populations 1.24829 0.96082 1.06532 1.00823 1.22940 0.94310 0.95143 0.99403 1.18751 0.85247 1.01572 0.83683 1.43813 1.51314 1.07216 1.09692 1.19665 1.22757 0.81752 1.24537 0.89636 1.26239 0.94899 1.02530 0.95863 1.70182 1.11554 1.33116 1.32857 0.85114 0.78686 0.76474 0.78836 1.18579 1.19872 1.19835 1.18075 0.86749 0.84611 0.85067 1.90597 1.55133 1.84112 1.20110 1.21396 0.94416 0.95055 0.88831 1.21789 1.00575 0.90891 1.01823 1.20770 0.91390 0.98065 0.91536 1.20904 1.06844 0.90750 0.99010 1.75295 1.14236 1.24396 0.99164 1.77974 1.13657 0.92576 1.14049 1.44594 1.45900 1.05941 1.15736 0.67945 1.20230 1.01361 0.92105 0.90184 1.67123 1.13355 1.20457 1.16209 0.76116 0.90979 0.86194 0.91220 0.81307 0.78864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.67 19.23 74.32 1.43 -9.24 16 2 C -0.12 -5.09 9.69 31.13 0.30 -4.79 16 3 C 0.23 10.09 4.77 84.58 0.40 10.49 16 4 N -0.41 -20.51 2.57 -648.64 -1.66 -22.17 16 5 C -0.36 -19.37 9.05 84.14 0.76 -18.61 16 6 H 0.09 4.85 7.62 -2.91 -0.02 4.83 16 7 C 0.01 0.66 4.66 84.99 0.40 1.05 16 8 N -0.84 -42.85 10.32 21.69 0.22 -42.62 16 9 Si 0.99 39.36 29.63 68.60 2.03 41.39 16 10 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 11 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 13 C 0.46 22.81 7.52 86.81 0.65 23.47 16 14 O -0.61 -33.43 16.07 -3.97 -0.06 -33.49 16 15 C 0.16 6.04 6.60 42.01 0.28 6.32 16 16 C -0.13 -3.91 9.55 22.37 0.21 -3.69 16 17 C 0.01 0.31 10.16 22.35 0.23 0.54 16 18 C -0.05 -1.37 7.38 39.84 0.29 -1.08 16 19 N -0.25 -7.25 12.43 -52.28 -0.65 -7.90 16 20 N 0.00 0.02 13.28 37.02 0.49 0.51 16 21 N -0.39 -9.49 7.06 -55.42 -0.39 -9.88 16 22 H 0.47 8.36 8.96 -219.84 -1.97 6.39 16 23 C 0.21 6.29 8.56 134.30 1.15 7.44 16 24 N -0.45 -16.21 4.86 -182.13 -0.89 -17.09 16 25 H 0.22 7.26 7.80 -4.42 -0.03 7.23 16 26 H 0.07 3.25 7.17 -2.39 -0.02 3.24 16 27 H 0.12 4.70 5.40 -2.39 -0.01 4.69 16 28 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.17 4.88 7.63 -2.91 -0.02 4.85 16 30 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.39 275.64 4.45 -61.94 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.75 Total: 17.43 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.11 Total: 11.89 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -2.88 Total: -99.16 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.06 Total: -33.49 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -66.39 4.45 -61.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467389127.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.572 kcal (2) G-P(sol) polarization free energy of solvation -66.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds