Wall clock time and date at job start Mon Mar 30 2020 00:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47057 * 270.00568 * 3 2 1 5 5 H 1.48505 * 109.46768 * 30.00297 * 3 2 1 6 6 H 1.48496 * 109.46986 * 149.99926 * 3 2 1 7 7 C 1.37881 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99604 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00601 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99157 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00352 * 180.02562 * 11 10 9 14 14 N 1.40092 * 119.99840 * 359.97438 * 13 11 10 15 15 C 1.39820 * 120.00053 * 180.02562 * 14 13 11 16 16 C 1.38900 * 120.03296 * 359.97438 * 15 14 13 17 17 C 1.38137 * 119.98975 * 180.02562 * 16 15 14 18 18 C 1.38419 * 120.07304 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.95960 * 180.27737 * 18 17 16 20 20 C 1.38665 * 120.08031 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.99789 * 180.02562 * 20 18 17 22 22 C 1.38324 * 120.00273 * 359.97438 * 20 18 17 23 23 H 0.96999 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47114 * 60.00299 * 9 7 2 25 25 H 1.09005 * 109.47336 * 299.99949 * 9 7 2 26 26 H 0.97010 * 119.99755 * 359.97438 * 10 9 7 27 27 H 0.96993 * 119.99519 * 180.02562 * 13 11 10 28 28 H 0.97003 * 120.00650 * 0.02562 * 14 13 11 29 29 H 1.07994 * 120.00241 * 0.04771 * 16 15 14 30 30 H 1.07995 * 119.96650 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.03213 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7538 -4.8834 -0.0015 12 8 0.5583 -5.1055 -0.0006 13 7 2.6296 -5.9078 -0.0021 14 7 4.0069 -5.6518 -0.0036 15 6 4.9156 -6.7145 -0.0048 16 6 4.4534 -8.0243 -0.0039 17 6 5.3519 -9.0735 -0.0045 18 6 6.7129 -8.8213 -0.0066 19 9 7.5896 -9.8491 -0.0128 20 6 7.1775 -7.5148 -0.0074 21 9 8.5063 -7.2705 -0.0099 22 6 6.2807 -6.4617 -0.0068 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0028 27 1 2.3062 -6.8222 -0.0022 28 1 4.3303 -4.7372 -0.0038 29 1 3.3918 -8.2224 -0.0031 30 1 4.9921 -10.0918 -0.0035 31 1 6.6421 -5.4439 -0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478544647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:38 Heat of formation + Delta-G solvation = -51.675508 kcal Electronic energy + Delta-G solvation = -19442.975209 eV Core-core repulsion = 15783.113706 eV Total energy + Delta-G solvation = -3659.861503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.57070 -48.62228 -40.14392 -38.99822 -36.02422 -34.42450 -32.47563 -31.90923 -30.80019 -28.00799 -27.23455 -23.88651 -22.88603 -22.53412 -20.43723 -19.12861 -18.81218 -17.69274 -17.29527 -16.55848 -16.43270 -16.22022 -15.30490 -15.19408 -15.05646 -14.96082 -14.60878 -14.37114 -14.23584 -13.51425 -13.33294 -13.15739 -12.79925 -12.17642 -12.09658 -11.56353 -11.33608 -11.07093 -10.96343 -10.44068 -9.88016 -9.50878 -9.50519 -9.19183 -8.86990 -8.13337 -7.41512 -6.25841 -4.33754 0.71659 0.87923 1.86119 3.14177 3.18636 3.24775 3.26834 3.52003 3.57973 3.71696 4.17500 4.25043 4.30348 4.59541 4.78077 4.84171 5.10791 5.43746 5.52292 5.58544 5.73422 5.78210 6.24249 6.52271 6.89826 7.16814 7.29869 7.40036 7.41362 7.74749 7.90030 8.55053 8.71141 8.95550 9.33126 10.84205 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.003510 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.235081 B = 7975.521658 C = 8989.610922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.723 5.723 11 C 0.701 3.299 12 O -0.579 6.579 13 N -0.545 5.545 14 N -0.533 5.533 15 C 0.248 3.752 16 C -0.183 4.183 17 C -0.067 4.067 18 C -0.002 4.002 19 F -0.137 7.137 20 C 0.126 3.874 21 F -0.127 7.127 22 C -0.207 4.207 23 H 0.267 0.733 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.382 0.618 27 H 0.426 0.574 28 H 0.429 0.571 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -15.141 -0.010 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.453 6.453 13 N -0.303 5.303 14 N -0.260 5.260 15 C 0.140 3.860 16 C -0.206 4.206 17 C -0.086 4.086 18 C -0.024 4.024 19 F -0.116 7.116 20 C 0.105 3.895 21 F -0.105 7.105 22 C -0.232 4.232 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.215 0.785 27 H 0.271 0.729 28 H 0.272 0.728 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.627 -14.941 -0.005 18.932 hybrid contribution 1.311 0.887 -0.010 1.583 sum 12.938 -14.054 -0.015 19.103 Atomic orbital electron populations 1.69962 1.06121 1.27506 1.48429 1.24937 0.94932 0.99479 0.94531 0.86390 0.79591 0.82499 0.78282 1.20396 1.20925 1.19729 1.21165 0.93216 0.90297 1.53849 0.91932 1.19105 0.87673 0.80853 0.98022 1.45816 1.10775 1.04495 1.76534 1.15973 0.84160 0.80948 0.78856 1.90997 1.12226 1.82592 1.59478 1.44809 0.92411 1.09647 1.83387 1.43433 0.93974 1.07068 1.81479 1.17359 0.87698 0.87512 0.93383 1.20381 1.00355 0.89965 1.09948 1.20755 0.89890 1.00601 0.97399 1.17367 0.87922 0.82835 1.14311 1.91491 1.68293 1.56937 1.94849 1.17188 0.77915 0.91916 1.02474 1.91533 1.30351 1.95008 1.93654 1.20178 0.90286 0.99614 1.13131 0.92293 0.95323 0.95306 0.78465 0.72916 0.72754 0.84630 0.83599 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 9 C 0.26 6.65 5.43 -5.19 -0.03 6.62 16 10 N -0.72 -14.12 5.51 -66.41 -0.37 -14.49 16 11 C 0.70 13.13 8.68 -86.92 -0.75 12.38 16 12 O -0.58 -13.29 17.18 5.29 0.09 -13.20 16 13 N -0.55 -7.24 6.22 27.63 0.17 -7.07 16 14 N -0.53 -5.73 6.45 32.42 0.21 -5.52 16 15 C 0.25 2.38 6.72 -83.75 -0.56 1.81 16 16 C -0.18 -1.57 9.48 -39.37 -0.37 -1.95 16 17 C -0.07 -0.56 10.02 -39.55 -0.40 -0.95 16 18 C 0.00 -0.02 7.30 -39.36 -0.29 -0.31 16 19 F -0.14 -1.56 17.18 2.25 0.04 -1.52 16 20 C 0.13 1.32 7.30 -39.39 -0.29 1.03 16 21 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 22 C -0.21 -1.91 9.87 -39.33 -0.39 -2.30 16 23 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.38 6.23 6.24 -40.82 -0.25 5.97 16 27 H 0.43 4.80 6.70 -182.61 -1.22 3.57 16 28 H 0.43 4.27 6.71 -182.60 -1.23 3.05 16 29 H 0.14 0.97 6.20 -52.49 -0.33 0.65 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -31.22 287.56 -7.52 -38.74 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.25 Total: 5.96 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.49 Total: 3.53 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.75 Total: -51.52 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.22 -7.52 -38.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478544647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.937 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds