Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47057 * 270.00568 * 3 2 1 5 5 H 1.48505 * 109.46768 * 30.00297 * 3 2 1 6 6 H 1.48496 * 109.46986 * 149.99926 * 3 2 1 7 7 C 1.37881 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99604 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00601 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99157 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00352 * 180.02562 * 11 10 9 14 14 N 1.40092 * 119.99840 * 359.97438 * 13 11 10 15 15 C 1.39820 * 120.00053 * 180.02562 * 14 13 11 16 16 C 1.38900 * 120.03296 * 359.97438 * 15 14 13 17 17 C 1.38137 * 119.98975 * 180.02562 * 16 15 14 18 18 C 1.38419 * 120.07304 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.95960 * 180.27737 * 18 17 16 20 20 C 1.38665 * 120.08031 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.99789 * 180.02562 * 20 18 17 22 22 C 1.38324 * 120.00273 * 359.97438 * 20 18 17 23 23 H 0.96999 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47114 * 60.00299 * 9 7 2 25 25 H 1.09005 * 109.47336 * 299.99949 * 9 7 2 26 26 H 0.97010 * 119.99755 * 359.97438 * 10 9 7 27 27 H 0.96993 * 119.99519 * 180.02562 * 13 11 10 28 28 H 0.97003 * 120.00650 * 0.02562 * 14 13 11 29 29 H 1.07994 * 120.00241 * 0.04771 * 16 15 14 30 30 H 1.07995 * 119.96650 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.03213 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7538 -4.8834 -0.0015 12 8 0.5583 -5.1055 -0.0006 13 7 2.6296 -5.9078 -0.0021 14 7 4.0069 -5.6518 -0.0036 15 6 4.9156 -6.7145 -0.0048 16 6 4.4534 -8.0243 -0.0039 17 6 5.3519 -9.0735 -0.0045 18 6 6.7129 -8.8213 -0.0066 19 9 7.5896 -9.8491 -0.0128 20 6 7.1775 -7.5148 -0.0074 21 9 8.5063 -7.2705 -0.0099 22 6 6.2807 -6.4617 -0.0068 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0028 27 1 2.3062 -6.8222 -0.0022 28 1 4.3303 -4.7372 -0.0038 29 1 3.3918 -8.2224 -0.0031 30 1 4.9921 -10.0918 -0.0035 31 1 6.6421 -5.4439 -0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478544647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -73.347884 kcal Electronic energy + Delta-G solvation = -19443.914994 eV Core-core repulsion = 15783.113706 eV Total energy + Delta-G solvation = -3660.801288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.40381 -49.46413 -41.35966 -40.08372 -37.14160 -36.24649 -34.32519 -32.92790 -31.63774 -29.24573 -28.79969 -25.14206 -24.29406 -23.40776 -21.91958 -20.47448 -19.77520 -18.56380 -18.43924 -17.87853 -17.48446 -17.26115 -16.78130 -16.67293 -16.24194 -15.98863 -15.90814 -15.43206 -14.97471 -14.91512 -14.63138 -14.08608 -13.94301 -13.93430 -13.59513 -12.91957 -12.72736 -12.34832 -12.30151 -12.22948 -11.57533 -11.46695 -10.82104 -10.47121 -10.04331 -9.85668 -8.36413 -8.28355 -6.44528 -0.02713 0.11979 0.81717 1.45914 1.47352 1.58292 2.01667 2.14903 2.43096 2.44172 2.92907 3.07594 3.39170 3.59817 3.70843 3.93458 4.11406 4.56241 4.76946 4.87606 4.97465 5.04320 5.08236 5.26379 5.28478 5.41329 5.55856 5.71609 5.82890 6.20477 6.37849 6.66832 7.20003 7.26689 7.48830 8.83644 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.003510 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.235081 B = 7975.521658 C = 8989.610922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.282 3.718 10 N -0.717 5.717 11 C 0.703 3.297 12 O -0.626 6.626 13 N -0.523 5.523 14 N -0.532 5.532 15 C 0.240 3.760 16 C -0.178 4.178 17 C -0.059 4.059 18 C -0.012 4.012 19 F -0.146 7.146 20 C 0.109 3.891 21 F -0.136 7.136 22 C -0.197 4.197 23 H 0.269 0.731 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.401 0.599 27 H 0.439 0.561 28 H 0.433 0.567 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.801 -15.342 0.000 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.159 3.841 10 N -0.372 5.372 11 C 0.402 3.598 12 O -0.504 6.504 13 N -0.278 5.278 14 N -0.262 5.262 15 C 0.135 3.865 16 C -0.202 4.202 17 C -0.078 4.078 18 C -0.035 4.035 19 F -0.125 7.125 20 C 0.088 3.912 21 F -0.115 7.115 22 C -0.222 4.222 23 H 0.078 0.922 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.237 0.763 27 H 0.286 0.714 28 H 0.278 0.722 29 H 0.170 0.830 30 H 0.190 0.810 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 13.627 -15.224 0.005 20.432 hybrid contribution 0.781 0.790 -0.015 1.111 sum 14.408 -14.433 -0.010 20.394 Atomic orbital electron populations 1.70121 1.08199 1.28593 1.49817 1.25999 0.95725 1.03716 0.93902 0.85186 0.78538 0.77163 0.78508 1.19747 1.21199 1.17873 1.21582 0.94367 0.90378 1.53033 0.89668 1.18516 0.88019 0.82963 0.94594 1.45323 1.10884 1.03879 1.77128 1.15920 0.84043 0.81300 0.78521 1.90967 1.14680 1.83506 1.61283 1.44239 0.93472 1.08780 1.81346 1.43371 0.92341 1.07774 1.82693 1.17440 0.87514 0.87532 0.94047 1.20641 1.01327 0.89580 1.08619 1.20999 0.88848 1.01882 0.96088 1.17675 0.88631 0.82602 1.14544 1.91469 1.68760 1.57318 1.94946 1.17372 0.77752 0.92419 1.03630 1.91509 1.31036 1.95087 1.93873 1.20282 0.89900 1.00212 1.11785 0.92228 0.99001 0.98975 0.76313 0.71355 0.72244 0.82993 0.81022 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 40.60 29.54 68.60 2.03 42.63 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.56 -28.55 9.28 25.60 0.24 -28.31 16 8 H 0.09 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.28 14.60 5.43 85.63 0.46 15.07 16 10 N -0.72 -27.84 5.51 -482.29 -2.66 -30.50 16 11 C 0.70 26.10 8.68 179.05 1.55 27.66 16 12 O -0.63 -29.34 17.18 -4.00 -0.07 -29.41 16 13 N -0.52 -12.95 6.22 -184.74 -1.15 -14.10 16 14 N -0.53 -10.15 6.45 -51.33 -0.33 -10.48 16 15 C 0.24 3.96 6.72 38.17 0.26 4.22 16 16 C -0.18 -2.53 9.48 22.40 0.21 -2.32 16 17 C -0.06 -0.81 10.02 22.29 0.22 -0.59 16 18 C -0.01 -0.23 7.30 22.41 0.16 -0.07 16 19 F -0.15 -3.14 17.18 44.97 0.77 -2.37 16 20 C 0.11 2.10 7.30 22.39 0.16 2.26 16 21 F -0.14 -2.98 17.18 44.97 0.77 -2.21 16 22 C -0.20 -3.18 9.87 22.43 0.22 -2.96 16 23 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 26 H 0.40 12.44 6.24 -92.70 -0.58 11.86 16 27 H 0.44 8.90 6.70 -213.33 -1.43 7.47 16 28 H 0.43 7.53 6.71 -213.32 -1.43 6.10 16 29 H 0.15 1.65 6.20 -2.91 -0.02 1.63 16 30 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -68.94 287.56 1.39 -67.55 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -2.22 Total: 16.92 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 3.96 Total: 15.77 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.85 Total: -108.88 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.07 Total: -29.41 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 1.54 Total: -4.58 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -68.94 1.39 -67.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478544647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds