Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47324 * 2 1 4 4 C 1.36913 * 120.00261 * 96.64281 * 3 2 1 5 5 H 1.07998 * 120.00385 * 165.14375 * 4 3 2 6 6 C 1.39023 * 119.99650 * 345.14490 * 4 3 2 7 7 N 1.31381 * 120.00021 * 341.27248 * 6 4 3 8 8 Si 1.86803 * 119.99813 * 161.27560 * 6 4 3 9 9 H 1.48494 * 109.47110 * 89.99900 * 8 6 4 10 10 H 1.48500 * 109.47179 * 210.00050 * 8 6 4 11 11 H 1.48507 * 109.47032 * 329.99812 * 8 6 4 12 12 C 1.34778 * 120.00188 * 276.64630 * 3 2 1 13 13 O 1.21604 * 120.00558 * 186.34006 * 12 3 2 14 14 C 1.47573 * 119.99607 * 6.33698 * 12 3 2 15 15 N 1.31874 * 126.46943 * 4.77664 * 14 12 3 16 16 N 1.28472 * 110.12793 * 180.16228 * 15 14 12 17 17 C 1.46494 * 124.93236 * 179.85791 * 16 15 14 18 18 C 1.52998 * 109.47342 * 304.69950 * 17 16 15 19 19 C 1.35656 * 110.13864 * 359.59609 * 16 15 14 20 20 C 1.35445 * 107.14576 * 0.24265 * 19 16 15 21 21 Cl 1.73597 * 127.24171 * 180.02562 * 20 19 16 22 22 H 1.09005 * 109.46911 * 60.00132 * 1 2 3 23 23 H 1.08999 * 109.46750 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47003 * 300.00107 * 1 2 3 25 25 H 1.09005 * 109.47205 * 239.99550 * 2 1 3 26 26 H 1.09005 * 109.46911 * 119.99868 * 2 1 3 27 27 H 0.97004 * 119.99952 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47139 * 64.69285 * 17 16 15 29 29 H 1.09000 * 109.47304 * 184.69409 * 17 16 15 30 30 H 1.09000 * 109.47363 * 59.99495 * 18 17 16 31 31 H 1.09004 * 109.47641 * 179.97438 * 18 17 16 32 32 H 1.08995 * 109.47206 * 299.99976 * 18 17 16 33 33 H 1.07995 * 126.43156 * 180.24530 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3759 1.9809 1.1777 5 1 2.9532 2.8936 1.1655 6 6 1.9959 1.4150 2.3893 7 7 1.0126 0.5445 2.4280 8 14 2.8833 1.8923 3.9623 9 1 2.2043 3.0602 4.5788 10 1 2.8602 0.7492 4.9100 11 1 4.2908 2.2468 3.6485 12 6 2.1157 2.0616 -1.1593 13 8 2.6278 3.1644 -1.1761 14 6 1.6008 1.4681 -2.4085 15 7 0.9476 0.3284 -2.5238 16 7 0.6499 0.1120 -3.7547 17 6 -0.0736 -1.0621 -4.2489 18 6 0.6520 -2.3332 -3.8031 19 6 1.0976 1.1314 -4.5297 20 6 1.7103 2.0177 -3.7089 21 17 2.4695 3.5132 -4.1568 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.7476 0.1493 3.2733 28 1 -1.0862 -1.0613 -3.8453 29 1 -0.1163 -1.0309 -5.3376 30 1 0.6947 -2.3643 -2.7144 31 1 0.1135 -3.2068 -4.1704 32 1 1.6645 -2.3340 -4.2065 33 1 0.9864 1.2198 -5.6003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526853394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = 66.909222 kcal Electronic energy + Delta-G solvation = -19347.900806 eV Core-core repulsion = 16244.978203 eV Total energy + Delta-G solvation = -3102.922603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18896 -38.14633 -36.00123 -34.91176 -34.24140 -31.81209 -30.17453 -29.54978 -29.08150 -25.51061 -23.87485 -22.10646 -21.50908 -20.86662 -19.09310 -17.06700 -16.61369 -16.13692 -15.60368 -14.69410 -14.54751 -14.04816 -13.95295 -13.38297 -13.21915 -12.71584 -12.58553 -12.51523 -12.18778 -11.74023 -11.60289 -11.28244 -11.09447 -11.00570 -10.71682 -10.63238 -10.31883 -10.08410 -9.82588 -9.68385 -8.85591 -8.65781 -8.37154 -8.28218 -7.58205 -6.26057 -3.73826 2.13430 2.35282 2.50177 3.16203 3.23247 3.28597 3.36067 4.15614 4.44861 4.52044 4.80804 4.83633 5.00608 5.07325 5.24592 5.41386 5.47077 5.65347 5.75858 5.96043 6.06102 6.47898 6.65361 6.88192 6.96008 7.01855 7.14104 7.48295 7.55619 7.98365 8.17555 8.33335 8.64071 9.24837 9.49836 10.09649 10.69803 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.007186 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.740005 B = 3895.720179 C = 5105.771392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.133 3.867 3 N -0.420 5.420 4 C -0.298 4.298 5 H 0.105 0.895 6 C 0.029 3.971 7 N -0.861 5.861 8 Si 0.925 3.075 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.508 3.492 13 O -0.574 6.574 14 C 0.032 3.968 15 N -0.243 5.243 16 N -0.297 5.297 17 C 0.125 3.875 18 C -0.168 4.168 19 C -0.019 4.019 20 C -0.110 4.110 21 Cl -0.024 7.024 22 H 0.031 0.969 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.266 0.734 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -6.748 -12.621 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 N -0.137 5.137 4 C -0.427 4.427 5 H 0.123 0.877 6 C -0.175 4.175 7 N -0.501 5.501 8 Si 0.751 3.249 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.295 3.705 13 O -0.458 6.458 14 C -0.129 4.129 15 N -0.077 5.077 16 N -0.085 5.085 17 C 0.004 3.996 18 C -0.225 4.225 19 C -0.163 4.163 20 C -0.148 4.148 21 Cl 0.004 6.996 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.532 -7.234 -11.929 14.391 hybrid contribution 0.478 0.756 0.099 0.900 sum -3.054 -6.478 -11.831 13.830 Atomic orbital electron populations 1.22057 0.96444 0.99114 1.01827 1.21383 0.95065 0.82671 0.99936 1.43690 1.53542 1.11404 1.05056 1.19778 1.31230 1.09821 0.81821 0.87727 1.25314 0.95676 0.97113 0.99380 1.70113 1.23842 1.29456 1.26647 0.85961 0.80209 0.77967 0.80762 1.20357 1.20850 1.19381 1.16602 0.86629 0.85634 0.81684 1.90642 1.49401 1.20547 1.85166 1.22554 1.02449 0.92563 0.95327 1.74215 1.16171 1.17717 0.99574 1.45693 1.41500 1.16961 1.04395 1.21862 0.95825 0.82294 0.99574 1.22076 1.00849 0.95477 1.04142 1.22410 1.04824 0.90800 0.98269 1.20806 1.07571 0.93138 0.93313 1.98314 1.79924 1.29351 1.91976 0.94968 0.95431 0.89375 0.93768 0.89481 0.92312 0.89127 0.88443 0.90358 0.90605 0.91974 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.02 37.16 0.34 -2.76 16 2 C 0.13 3.20 4.87 -4.04 -0.02 3.18 16 3 N -0.42 -11.37 2.64 -115.97 -0.31 -11.67 16 4 C -0.30 -8.45 9.41 -14.99 -0.14 -8.59 16 5 H 0.11 3.10 7.30 -52.49 -0.38 2.71 16 6 C 0.03 0.75 4.98 -17.45 -0.09 0.67 16 7 N -0.86 -22.37 8.29 55.50 0.46 -21.91 16 8 Si 0.92 20.66 29.59 -169.99 -5.03 15.63 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.51 13.63 7.57 -12.45 -0.09 13.53 16 13 O -0.57 -16.76 15.51 5.27 0.08 -16.68 16 14 C 0.03 0.73 6.53 -82.76 -0.54 0.19 16 15 N -0.24 -4.70 6.28 33.42 0.21 -4.49 16 16 N -0.30 -4.43 3.42 -61.15 -0.21 -4.64 16 17 C 0.12 1.19 7.12 -4.05 -0.03 1.16 16 18 C -0.17 -1.56 10.02 37.16 0.37 -1.19 16 19 C -0.02 -0.28 11.44 -16.86 -0.19 -0.48 16 20 C -0.11 -2.12 6.80 -39.30 -0.27 -2.39 16 21 Cl -0.02 -0.45 28.19 -51.86 -1.46 -1.91 16 22 H 0.03 0.72 5.98 -51.93 -0.31 0.41 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.09 2.25 6.01 -51.93 -0.31 1.94 16 25 H 0.04 1.00 6.09 -51.93 -0.32 0.69 16 26 H 0.09 2.21 6.08 -51.93 -0.32 1.90 16 27 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -32.27 289.52 -6.28 -38.54 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.72 Total: -0.56 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.66 Total: 3.33 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.16 Total: -42.71 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.08 Total: -16.68 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.46 Total: -1.91 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.27 -6.28 -38.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526853394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.454 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds