Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47324 * 2 1 4 4 C 1.36913 * 120.00261 * 96.64281 * 3 2 1 5 5 H 1.07998 * 120.00385 * 165.14375 * 4 3 2 6 6 C 1.39023 * 119.99650 * 345.14490 * 4 3 2 7 7 N 1.31381 * 120.00021 * 341.27248 * 6 4 3 8 8 Si 1.86803 * 119.99813 * 161.27560 * 6 4 3 9 9 H 1.48494 * 109.47110 * 89.99900 * 8 6 4 10 10 H 1.48500 * 109.47179 * 210.00050 * 8 6 4 11 11 H 1.48507 * 109.47032 * 329.99812 * 8 6 4 12 12 C 1.34778 * 120.00188 * 276.64630 * 3 2 1 13 13 O 1.21604 * 120.00558 * 186.34006 * 12 3 2 14 14 C 1.47573 * 119.99607 * 6.33698 * 12 3 2 15 15 N 1.31874 * 126.46943 * 4.77664 * 14 12 3 16 16 N 1.28472 * 110.12793 * 180.16228 * 15 14 12 17 17 C 1.46494 * 124.93236 * 179.85791 * 16 15 14 18 18 C 1.52998 * 109.47342 * 304.69950 * 17 16 15 19 19 C 1.35656 * 110.13864 * 359.59609 * 16 15 14 20 20 C 1.35445 * 107.14576 * 0.24265 * 19 16 15 21 21 Cl 1.73597 * 127.24171 * 180.02562 * 20 19 16 22 22 H 1.09005 * 109.46911 * 60.00132 * 1 2 3 23 23 H 1.08999 * 109.46750 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47003 * 300.00107 * 1 2 3 25 25 H 1.09005 * 109.47205 * 239.99550 * 2 1 3 26 26 H 1.09005 * 109.46911 * 119.99868 * 2 1 3 27 27 H 0.97004 * 119.99952 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47139 * 64.69285 * 17 16 15 29 29 H 1.09000 * 109.47304 * 184.69409 * 17 16 15 30 30 H 1.09000 * 109.47363 * 59.99495 * 18 17 16 31 31 H 1.09004 * 109.47641 * 179.97438 * 18 17 16 32 32 H 1.08995 * 109.47206 * 299.99976 * 18 17 16 33 33 H 1.07995 * 126.43156 * 180.24530 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3759 1.9809 1.1777 5 1 2.9532 2.8936 1.1655 6 6 1.9959 1.4150 2.3893 7 7 1.0126 0.5445 2.4280 8 14 2.8833 1.8923 3.9623 9 1 2.2043 3.0602 4.5788 10 1 2.8602 0.7492 4.9100 11 1 4.2908 2.2468 3.6485 12 6 2.1157 2.0616 -1.1593 13 8 2.6278 3.1644 -1.1761 14 6 1.6008 1.4681 -2.4085 15 7 0.9476 0.3284 -2.5238 16 7 0.6499 0.1120 -3.7547 17 6 -0.0736 -1.0621 -4.2489 18 6 0.6520 -2.3332 -3.8031 19 6 1.0976 1.1314 -4.5297 20 6 1.7103 2.0177 -3.7089 21 17 2.4695 3.5132 -4.1568 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.7476 0.1493 3.2733 28 1 -1.0862 -1.0613 -3.8453 29 1 -0.1163 -1.0309 -5.3376 30 1 0.6947 -2.3643 -2.7144 31 1 0.1135 -3.2068 -4.1704 32 1 1.6645 -2.3340 -4.2065 33 1 0.9864 1.2198 -5.6003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526853394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = 46.291836 kcal Electronic energy + Delta-G solvation = -19348.794843 eV Core-core repulsion = 16244.978203 eV Total energy + Delta-G solvation = -3103.816640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.55558 -40.11075 -37.43254 -36.91587 -35.30577 -33.77329 -31.67678 -31.03893 -30.64871 -27.33555 -25.27696 -23.89023 -22.99977 -22.10853 -20.76374 -18.80097 -18.25963 -17.73748 -17.03750 -16.46380 -15.88163 -15.75781 -15.49591 -14.83246 -14.71244 -14.55062 -14.30644 -13.73191 -13.48346 -13.03817 -12.96412 -12.88615 -12.73877 -12.59902 -12.28105 -12.13535 -12.08183 -11.99613 -11.60517 -11.28021 -10.84272 -10.44890 -10.06256 -9.73044 -9.55520 -8.27332 -5.85867 0.70727 1.01998 1.11513 1.43345 1.44821 1.57096 1.91356 2.30217 2.52136 3.07092 3.19444 3.59011 3.85830 4.02683 4.11906 4.32865 4.42765 4.54808 4.62814 4.85325 4.92029 4.97053 5.05976 5.09545 5.26441 5.34540 5.44513 5.55080 5.87331 6.02331 6.14986 6.55512 6.94843 7.20018 7.48234 8.07331 8.67111 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.007186 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.740005 B = 3895.720179 C = 5105.771392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.143 3.857 3 N -0.435 5.435 4 C -0.347 4.347 5 H 0.076 0.924 6 C 0.002 3.998 7 N -0.867 5.867 8 Si 0.990 3.010 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.275 1.275 12 C 0.495 3.505 13 O -0.616 6.616 14 C -0.013 4.013 15 N -0.249 5.249 16 N -0.281 5.281 17 C 0.111 3.889 18 C -0.165 4.165 19 C 0.019 3.981 20 C -0.142 4.142 21 Cl -0.031 7.031 22 H 0.031 0.969 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.274 0.726 28 H 0.103 0.897 29 H 0.148 0.852 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 -8.810 -14.461 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.020 3.980 3 N -0.152 5.152 4 C -0.475 4.475 5 H 0.094 0.906 6 C -0.201 4.201 7 N -0.505 5.505 8 Si 0.813 3.187 9 H -0.200 1.200 10 H -0.189 1.189 11 H -0.200 1.200 12 C 0.284 3.716 13 O -0.502 6.502 14 C -0.172 4.172 15 N -0.085 5.085 16 N -0.070 5.070 17 C -0.006 4.006 18 C -0.223 4.223 19 C -0.126 4.126 20 C -0.180 4.180 21 Cl -0.003 7.003 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.166 0.834 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.894 -9.344 -13.760 17.338 hybrid contribution 0.795 1.276 0.529 1.594 sum -4.099 -8.068 -13.231 16.030 Atomic orbital electron populations 1.21831 0.95314 1.00190 1.00246 1.21328 0.95793 0.81336 0.99504 1.43894 1.54000 1.12345 1.04985 1.19689 1.33663 1.10512 0.83593 0.90636 1.26038 0.95770 0.96792 1.01513 1.70190 1.23465 1.29082 1.27776 0.85014 0.78493 0.78200 0.77014 1.20034 1.18870 1.19999 1.17268 0.85817 0.85456 0.83082 1.90573 1.50989 1.22327 1.86298 1.21983 1.05628 0.94861 0.94723 1.74045 1.15762 1.16519 1.02190 1.46348 1.39586 1.17943 1.03083 1.22520 0.95552 0.80024 1.02551 1.22071 1.01217 0.96851 1.02155 1.23124 1.01097 0.88400 0.99964 1.21074 1.09668 0.94194 0.93016 1.98300 1.80266 1.29988 1.91739 0.95032 0.92858 0.92256 0.92542 0.91255 0.91563 0.87881 0.83395 0.93429 0.87186 0.92492 0.74748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 9.02 71.98 0.65 -4.69 16 2 C 0.14 7.04 4.87 86.38 0.42 7.46 16 3 N -0.44 -24.67 2.64 -639.08 -1.68 -26.36 16 4 C -0.35 -20.70 9.41 84.09 0.79 -19.91 16 5 H 0.08 4.82 7.30 -2.91 -0.02 4.80 16 6 C 0.00 0.11 4.98 84.95 0.42 0.53 16 7 N -0.87 -45.54 8.29 21.68 0.18 -45.36 16 8 Si 0.99 43.13 29.59 68.60 2.03 45.16 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 C 0.50 27.87 7.57 86.71 0.66 28.53 16 13 O -0.62 -38.15 15.51 -4.04 -0.06 -38.21 16 14 C -0.01 -0.58 6.53 42.43 0.28 -0.31 16 15 N -0.25 -9.34 6.28 -48.19 -0.30 -9.64 16 16 N -0.28 -7.38 3.42 -347.39 -1.19 -8.57 16 17 C 0.11 1.55 7.12 86.38 0.62 2.17 16 18 C -0.17 -2.45 10.02 71.98 0.72 -1.73 16 19 C 0.02 0.48 11.44 83.46 0.95 1.43 16 20 C -0.14 -5.31 6.80 22.45 0.15 -5.16 16 21 Cl -0.03 -1.17 28.19 -2.72 -0.08 -1.25 16 22 H 0.03 1.41 5.98 -2.38 -0.01 1.40 16 23 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 3.06 6.01 -2.39 -0.01 3.04 16 25 H 0.06 2.60 6.09 -2.38 -0.01 2.58 16 26 H 0.07 3.61 6.08 -2.38 -0.01 3.59 16 27 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 28 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.15 0.70 8.05 -2.39 -0.02 0.69 16 30 H 0.05 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.24 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -76.18 289.52 5.69 -70.49 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.13 Total: 5.41 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.66 Total: 8.33 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -3.00 Total: -89.93 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.06 Total: -38.21 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -76.18 5.69 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526853394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.783 kcal (2) G-P(sol) polarization free energy of solvation -76.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds