Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47257 * 316.58370 * 3 2 1 5 5 C 1.36694 * 119.99945 * 277.54165 * 4 3 2 6 6 H 1.08004 * 119.99989 * 179.37683 * 5 4 3 7 7 C 1.39137 * 120.00343 * 359.38144 * 5 4 3 8 8 N 1.31305 * 119.99583 * 27.12830 * 7 5 4 9 9 Si 1.86792 * 120.00027 * 207.13585 * 7 5 4 10 10 H 1.48506 * 109.47302 * 94.99208 * 9 7 5 11 11 H 1.48504 * 109.47270 * 214.98936 * 9 7 5 12 12 H 1.48501 * 109.47599 * 334.99075 * 9 7 5 13 13 C 1.34778 * 120.00065 * 97.54437 * 4 3 2 14 14 O 1.21697 * 120.00229 * 185.48028 * 13 4 3 15 15 C 1.46990 * 120.00025 * 5.47953 * 13 4 3 16 16 C 1.37938 * 119.94979 * 332.37345 * 15 13 4 17 17 C 1.39761 * 119.91357 * 179.97438 * 16 15 13 18 18 C 1.36365 * 119.83743 * 0.02562 * 17 16 15 19 19 C 1.40744 * 119.73271 * 0.25284 * 18 17 16 20 20 N 1.32837 * 132.74351 * 180.39559 * 19 18 17 21 21 C 1.32382 * 109.74139 * 179.56853 * 20 19 18 22 22 N 1.31379 * 109.62129 * 359.75095 * 21 20 19 23 23 N 1.36575 * 119.88583 * 359.48691 * 19 18 17 24 24 H 1.08999 * 109.47025 * 196.58504 * 3 2 1 25 25 H 1.08998 * 109.47296 * 76.58274 * 3 2 1 26 26 H 0.97003 * 119.99824 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.04037 * 0.02562 * 16 15 13 28 28 H 1.08005 * 120.08181 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.13631 * 179.97438 * 18 17 16 30 30 H 1.07998 * 125.18906 * 179.71803 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.0024 0.9493 5 6 3.1780 -0.7014 2.2802 6 1 3.5288 -1.4442 2.9814 7 6 2.8086 0.5617 2.7317 8 7 1.9232 1.2647 2.0637 9 14 3.5724 1.2576 4.2878 10 1 4.7321 2.1135 3.9302 11 1 2.5633 2.0698 5.0142 12 1 4.0290 0.1431 5.1565 13 6 3.4664 -2.2219 0.5103 14 8 3.7774 -3.0871 1.3076 15 6 3.4941 -2.5069 -0.9314 16 6 2.6556 -1.8208 -1.7852 17 6 2.6829 -2.0920 -3.1560 18 6 3.5386 -3.0348 -3.6442 19 6 4.3852 -3.7325 -2.7625 20 7 5.3021 -4.6753 -2.9497 21 6 5.8431 -5.0098 -1.7887 22 7 5.3011 -4.2966 -0.8277 23 7 4.3532 -3.4549 -1.4256 24 1 2.9708 0.9857 0.2933 25 1 2.9714 -0.2376 -0.9996 26 1 1.6660 2.1455 2.3783 27 1 1.9795 -1.0744 -1.3949 28 1 2.0278 -1.5561 -3.8270 29 1 3.5634 -3.2485 -4.7025 30 1 6.6122 -5.7556 -1.6523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542734781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = 153.442611 kcal Electronic energy + Delta-G solvation = -20218.316223 eV Core-core repulsion = 17018.038496 eV Total energy + Delta-G solvation = -3200.277727 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.69786 -41.21576 -38.49045 -37.93945 -36.33856 -34.47294 -34.17624 -32.09419 -31.11606 -29.39478 -27.49314 -25.27130 -24.51012 -23.57575 -21.35272 -20.16552 -19.14002 -18.43370 -18.29348 -17.71706 -17.20411 -17.15157 -16.57306 -15.96954 -15.60632 -15.44521 -14.88203 -14.78094 -14.05664 -13.74798 -13.58547 -13.34481 -13.27001 -13.11535 -13.05068 -12.68603 -12.39929 -12.19179 -12.14927 -11.98074 -11.22421 -11.16251 -10.75573 -10.56817 -10.25615 -9.29622 -8.66745 -6.05488 -0.73429 -0.04565 0.92822 1.27398 1.44252 1.52648 1.54268 1.75900 1.91691 2.09133 2.24073 2.41681 2.59215 2.82389 3.04687 3.36621 3.38357 3.55366 3.78322 3.99289 4.16159 4.29114 4.32587 4.79409 4.84181 5.00278 5.20777 5.30110 5.32153 5.37793 5.59357 5.76452 6.18113 6.83902 6.88331 6.89949 7.03719 7.63728 8.34507 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.006634 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.320220 B = 4219.660797 C = 5109.464011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.257 3.743 3 C 0.178 3.822 4 N -0.415 5.415 5 C -0.347 4.347 6 H 0.087 0.913 7 C 0.022 3.978 8 N -0.861 5.861 9 Si 0.990 3.010 10 H -0.256 1.256 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.454 3.546 14 O -0.602 6.602 15 C 0.098 3.902 16 C -0.150 4.150 17 C -0.038 4.038 18 C -0.091 4.091 19 C 0.257 3.743 20 N -0.563 5.563 21 C 0.222 3.778 22 N -0.367 5.367 23 N -0.276 5.276 24 H 0.137 0.863 25 H 0.156 0.844 26 H 0.289 0.711 27 H 0.183 0.817 28 H 0.213 0.787 29 H 0.200 0.800 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 1.486 -13.052 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.060 4.060 3 C 0.053 3.947 4 N -0.132 5.132 5 C -0.474 4.474 6 H 0.105 0.895 7 C -0.184 4.184 8 N -0.497 5.497 9 Si 0.813 3.187 10 H -0.181 1.181 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.244 3.756 14 O -0.488 6.488 15 C -0.015 4.015 16 C -0.174 4.174 17 C -0.063 4.063 18 C -0.113 4.113 19 C 0.005 3.995 20 N -0.295 5.295 21 C -0.078 4.078 22 N -0.198 5.198 23 N -0.052 5.052 24 H 0.154 0.846 25 H 0.173 0.827 26 H 0.100 0.900 27 H 0.199 0.801 28 H 0.230 0.770 29 H 0.217 0.783 30 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 1.705 0.939 -12.127 12.283 hybrid contribution 0.597 0.134 1.556 1.672 sum 2.302 1.072 -10.571 10.872 Atomic orbital electron populations 1.80960 1.13938 1.10112 1.11114 1.28965 0.95083 0.91381 0.90599 1.20261 0.81200 0.97125 0.96114 1.43628 1.52368 1.09534 1.07705 1.19747 1.44873 0.99216 0.83566 0.89544 1.25948 0.94151 0.95494 1.02822 1.69846 1.24026 1.13779 1.42087 0.84967 0.78663 0.78055 0.76999 1.18087 1.19974 1.20475 1.17629 0.87664 0.83306 0.86991 1.90714 1.55723 1.45663 1.56706 1.20290 0.94279 0.92136 0.94758 1.22615 0.99111 1.00679 0.94996 1.21758 0.96283 0.94759 0.93474 1.20997 0.93874 0.95409 1.01017 1.22784 0.97512 0.95714 0.83468 1.70802 1.14072 1.17567 1.27013 1.26977 0.98413 0.97738 0.84624 1.78905 1.08312 1.10712 1.21823 1.47599 1.24709 1.24726 1.08164 0.84565 0.82722 0.90027 0.80091 0.76974 0.78292 0.72459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.23 18.54 20.01 0.37 -19.86 16 2 C 0.26 10.00 11.37 89.44 1.02 11.02 16 3 C 0.18 6.38 4.76 84.57 0.40 6.78 16 4 N -0.42 -19.24 2.60 -649.67 -1.69 -20.93 16 5 C -0.35 -17.80 9.39 84.15 0.79 -17.01 16 6 H 0.09 4.94 7.29 -2.91 -0.02 4.92 16 7 C 0.02 1.02 5.00 84.99 0.42 1.44 16 8 N -0.86 -38.40 8.82 21.69 0.19 -38.21 16 9 Si 0.99 37.74 29.63 68.60 2.03 39.77 16 10 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 11 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 12 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 13 C 0.45 22.13 7.47 86.54 0.65 22.77 16 14 O -0.60 -35.29 15.98 -4.34 -0.07 -35.36 16 15 C 0.10 3.79 6.53 40.54 0.26 4.05 16 16 C -0.15 -4.06 7.51 22.57 0.17 -3.89 16 17 C -0.04 -0.64 10.04 22.20 0.22 -0.42 16 18 C -0.09 -1.82 10.09 22.45 0.23 -1.59 16 19 C 0.26 8.14 7.88 134.14 1.06 9.20 16 20 N -0.56 -18.27 11.24 -198.17 -2.23 -20.50 16 21 C 0.22 7.29 12.98 180.83 2.35 9.64 16 22 N -0.37 -15.53 12.06 -61.38 -0.74 -16.27 16 23 N -0.28 -10.88 3.92 -181.82 -0.71 -11.59 16 24 H 0.14 4.88 6.27 -2.39 -0.01 4.87 16 25 H 0.16 4.16 4.07 -3.01 -0.01 4.15 16 26 H 0.29 12.06 8.31 -92.71 -0.77 11.29 16 27 H 0.18 4.85 2.81 -2.91 -0.01 4.84 16 28 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.26 5.70 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -76.26 270.05 5.95 -70.31 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.22 Total: 10.65 kcal Atomic # 6 Polarization: 34.42 SS G_CDS: 7.57 Total: 41.99 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -4.81 Total: -127.36 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.07 Total: -35.36 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -76.26 5.95 -70.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542734781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.748 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds