Wall clock time and date at job start Mon Mar 30 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47470 * 2 1 4 4 C 1.35640 * 124.92948 * 124.99930 * 3 2 1 5 5 C 1.35466 * 107.13095 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 127.23975 * 179.97438 * 5 4 3 7 7 C 1.41546 * 105.52074 * 359.97438 * 5 4 3 8 8 C 1.47671 * 126.46164 * 179.97438 * 7 5 4 9 9 O 1.21576 * 119.99695 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00213 * 180.02562 * 8 7 5 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.50697 * 109.47081 * 155.00043 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 N 1.28463 * 124.93724 * 305.32144 * 3 2 1 23 23 H 1.09002 * 109.46960 * 299.99416 * 1 2 3 24 24 H 1.09003 * 109.47569 * 59.98994 * 1 2 3 25 25 H 1.08997 * 109.47899 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46484 * 240.00350 * 2 1 3 27 27 H 1.08993 * 109.47044 * 120.01049 * 2 1 3 28 28 H 1.07999 * 126.44128 * 0.04020 * 4 3 2 29 29 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 31 31 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 32 32 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 33 33 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8786 1.9007 0.9110 5 6 3.0843 3.1961 0.5721 6 17 4.0958 4.3474 1.3875 7 6 2.3009 3.4134 -0.5866 8 6 2.1845 4.6763 -1.3431 9 8 2.8001 5.6604 -0.9815 10 7 1.3958 4.7381 -2.4342 11 6 1.2798 5.9911 -3.1843 12 1 2.2368 6.5127 -3.1705 13 6 0.2086 6.8736 -2.5405 14 6 0.8926 5.6895 -4.6092 15 1 0.7470 4.6669 -4.9243 16 6 0.7242 6.7193 -5.5104 17 7 0.9010 7.9647 -5.1266 18 14 0.2436 6.3457 -7.2765 19 1 0.1050 4.8776 -7.4518 20 1 -1.0502 7.0050 -7.5874 21 1 1.2930 6.8574 -8.1940 22 7 1.6896 2.2778 -0.8593 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8932 -0.5140 0.8898 28 1 3.3175 1.3796 1.7489 29 1 0.9043 3.9530 -2.7224 30 1 -0.7484 6.3521 -2.5544 31 1 0.1227 7.8061 -3.0984 32 1 0.4887 7.0917 -1.5099 33 1 0.7829 8.6891 -5.7607 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543279332.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:04 Heat of formation + Delta-G solvation = 8.574261 kcal Electronic energy + Delta-G solvation = -18382.494407 eV Core-core repulsion = 15277.042210 eV Total energy + Delta-G solvation = -3105.452197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.72344 -40.29023 -37.50869 -36.69883 -35.42780 -34.30780 -31.95094 -31.20672 -30.28301 -27.35099 -25.98347 -23.69478 -22.54151 -22.18804 -20.94046 -19.41515 -18.20060 -17.46607 -17.23921 -17.01570 -16.02541 -15.85393 -15.66201 -15.09364 -14.79479 -14.54068 -14.39660 -13.73214 -13.56227 -13.02131 -12.99830 -12.87781 -12.86391 -12.74180 -12.55666 -12.28552 -12.16055 -12.12443 -11.61800 -11.10627 -10.91090 -10.60156 -10.37325 -9.88407 -9.68634 -8.17187 -6.34675 0.47777 0.88918 0.97717 1.44845 1.45155 1.58050 1.73433 2.34044 2.40444 2.57864 3.12975 3.38843 3.74428 3.93845 4.06713 4.21195 4.38094 4.43848 4.71594 4.80705 4.83542 4.92535 4.96080 5.08339 5.29937 5.41859 5.58922 5.66635 5.74059 5.89357 6.08405 6.64420 6.71387 6.97304 7.29777 7.46885 8.89716 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.005115 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.679650 B = 5472.428953 C = 6517.865650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.268 5.268 4 C 0.025 3.975 5 C -0.134 4.134 6 Cl -0.025 7.025 7 C -0.028 4.028 8 C 0.579 3.421 9 O -0.571 6.571 10 N -0.692 5.692 11 C 0.270 3.730 12 H 0.004 0.996 13 C -0.132 4.132 14 C -0.547 4.547 15 H 0.069 0.931 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.281 1.281 22 N -0.255 5.255 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.151 0.849 28 H 0.241 0.759 29 H 0.404 0.596 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.012 0.988 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -20.468 12.817 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.058 5.058 4 C -0.120 4.120 5 C -0.171 4.171 6 Cl 0.004 6.996 7 C -0.187 4.187 8 C 0.363 3.637 9 O -0.449 6.449 10 N -0.340 5.340 11 C 0.168 3.832 12 H 0.022 0.978 13 C -0.191 4.191 14 C -0.585 4.585 15 H 0.087 0.913 16 C -0.185 4.185 17 N -0.554 5.554 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.207 1.207 22 N -0.092 5.092 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.169 0.831 28 H 0.258 0.742 29 H 0.238 0.762 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.257 -20.104 12.285 23.561 hybrid contribution 0.284 0.717 -0.433 0.884 sum 0.540 -19.387 11.852 22.729 Atomic orbital electron populations 1.22094 0.93085 1.04817 1.02543 1.22641 0.96733 0.73608 1.07897 1.46230 1.30865 1.11352 1.17310 1.23256 0.97738 0.92095 0.98864 1.21101 1.04059 0.93506 0.98476 1.98338 1.65840 1.58617 1.76820 1.21811 1.03620 0.93767 0.99533 1.17386 0.79647 0.85948 0.80690 1.90748 1.47898 1.37050 1.69194 1.46177 1.45565 1.15563 1.26694 1.18445 0.94296 0.80777 0.89731 0.97820 1.21891 0.98324 1.01953 0.96923 1.21518 1.48734 0.94020 0.94225 0.91255 1.25802 0.94639 0.94521 1.03489 1.70054 1.49165 0.99682 1.36541 0.85255 0.77750 0.78730 0.78328 1.18599 1.20162 1.20737 1.73547 1.21527 0.97478 1.16648 0.92458 0.93221 0.87185 0.87279 0.83084 0.74250 0.76163 0.94280 0.91069 0.96840 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.01 71.98 0.72 -0.99 16 2 C 0.11 0.94 7.12 86.38 0.62 1.55 16 3 N -0.27 -5.38 3.43 -347.39 -1.19 -6.57 16 4 C 0.02 0.48 11.44 83.46 0.95 1.43 16 5 C -0.13 -4.10 6.80 22.44 0.15 -3.95 16 6 Cl -0.02 -0.78 28.17 -2.72 -0.08 -0.86 16 7 C -0.03 -1.03 7.13 42.45 0.30 -0.73 16 8 C 0.58 27.12 7.79 86.74 0.68 27.79 16 9 O -0.57 -30.52 15.54 -3.96 -0.06 -30.59 16 10 N -0.69 -32.94 5.07 -449.15 -2.28 -35.22 16 11 C 0.27 15.02 2.56 44.24 0.11 15.13 16 12 H 0.00 0.25 7.58 -2.39 -0.02 0.23 16 13 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 14 C -0.55 -30.49 8.73 25.60 0.22 -30.26 16 15 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 18 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 N -0.25 -7.74 11.35 -48.17 -0.55 -8.29 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 25 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.15 -0.03 8.04 -2.39 -0.02 -0.05 16 28 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.40 17.36 8.26 -92.70 -0.77 16.59 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 4.10 6.07 -2.39 -0.01 4.09 16 32 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -76.06 304.73 3.36 -72.69 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.37 Total: 12.34 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.87 Total: 4.86 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.77 Total: -103.67 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -76.06 3.36 -72.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543279332.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.267 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds