Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 102.99980 * 2 1 4 4 C 1.53002 * 109.47541 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47315 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47464 * 54.99825 * 5 4 3 7 7 N 1.46506 * 109.46839 * 294.99636 * 5 4 3 8 8 C 1.34781 * 119.99731 * 155.00237 * 7 5 4 9 9 O 1.21690 * 120.00229 * 359.97438 * 8 7 5 10 10 C 1.46376 * 119.99711 * 180.02562 * 8 7 5 11 11 H 1.07993 * 120.00240 * 353.93170 * 10 8 7 12 12 C 1.40050 * 119.99582 * 173.94057 * 10 8 7 13 13 N 1.30668 * 120.00567 * 6.14347 * 12 10 8 14 14 Si 1.86808 * 119.99763 * 186.14676 * 12 10 8 15 15 H 1.48495 * 109.47147 * 94.98158 * 14 12 10 16 16 H 1.48500 * 109.46953 * 214.98191 * 14 12 10 17 17 H 1.48501 * 109.46800 * 334.98471 * 14 12 10 18 18 C 1.50701 * 109.47130 * 175.00445 * 5 4 3 19 19 N 1.33315 * 126.55447 * 74.68083 * 18 5 4 20 20 N 1.28994 * 107.35560 * 180.26263 * 19 18 5 21 21 N 1.28781 * 108.72414 * 0.02562 * 20 19 18 22 22 H 0.97003 * 125.44692 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.10711 * 359.97438 * 21 20 19 24 24 H 1.08999 * 109.47187 * 299.99492 * 1 2 3 25 25 H 1.08998 * 109.47403 * 59.99775 * 1 2 3 26 26 H 1.09007 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47052 * 59.99742 * 3 2 1 28 28 H 1.08998 * 109.47313 * 300.00211 * 3 2 1 29 29 H 1.09000 * 109.46808 * 59.99749 * 4 3 2 30 30 H 1.08998 * 109.47006 * 300.00420 * 4 3 2 31 31 H 0.96993 * 120.00467 * 335.00402 * 7 5 4 32 32 H 0.96998 * 120.00545 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4308 0.0013 6 1 3.5934 3.9171 0.8430 7 7 3.6279 4.0383 -1.2506 8 6 3.3508 5.3564 -1.2981 9 8 3.4809 6.0418 -0.3010 10 6 2.8922 5.9632 -2.5487 11 1 2.8694 5.3783 -3.4562 12 6 2.4833 7.3025 -2.5684 13 7 2.6232 8.0442 -1.5017 14 14 1.7376 8.0287 -4.1196 15 1 0.2569 7.9466 -4.0424 16 1 2.1485 9.4499 -4.2479 17 1 2.2146 7.2667 -5.3016 18 6 5.5785 3.6019 0.1256 19 7 6.4842 3.3911 -0.8296 20 7 7.6434 3.6432 -0.3231 21 7 7.4894 4.0000 0.9046 22 1 8.2040 4.2444 1.5134 23 7 6.2340 3.9805 1.1953 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8031 2.2371 -0.8899 29 1 4.1616 1.4703 -0.8891 30 1 4.1608 1.4705 0.8908 31 1 3.5239 3.4919 -2.0452 32 1 2.3396 8.9717 -1.5152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557589145.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = 74.866325 kcal Electronic energy + Delta-G solvation = -18463.211096 eV Core-core repulsion = 15394.969997 eV Total energy + Delta-G solvation = -3068.241100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.01585 -37.93741 -35.34987 -33.66955 -32.54664 -32.31567 -31.19359 -29.00453 -27.35591 -25.66390 -24.11227 -22.77773 -21.15597 -19.90241 -18.49524 -17.34791 -16.62758 -16.29761 -15.51876 -15.07795 -14.93906 -14.44238 -13.99207 -13.72587 -13.40121 -13.31111 -13.05044 -12.37086 -12.16927 -11.99196 -11.53348 -11.41513 -11.17765 -11.05049 -10.90093 -10.83637 -10.58714 -10.50011 -10.26531 -10.03559 -9.82796 -8.90807 -7.84973 -7.70758 -7.64197 -6.25360 -4.69296 1.53890 1.68679 2.55497 2.61152 2.71049 3.11396 3.19233 3.23048 4.05393 4.20765 4.52201 4.58251 4.97459 5.03439 5.09646 5.11300 5.20266 5.29606 5.64697 5.69566 5.75839 5.82504 5.99746 6.06500 6.15238 6.36055 6.78880 7.39644 7.79821 7.93249 8.26430 8.66928 8.97609 9.40539 10.51818 10.69771 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.006908 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.386844 B = 4052.226482 C = 6019.665797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.276 6.276 3 C -0.075 4.075 4 C -0.100 4.100 5 C 0.255 3.745 6 H 0.108 0.892 7 N -0.747 5.747 8 C 0.554 3.446 9 O -0.576 6.576 10 C -0.541 4.541 11 H 0.070 0.930 12 C 0.088 3.912 13 N -0.767 5.767 14 Si 0.907 3.093 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.263 1.263 18 C 0.182 3.818 19 N -0.263 5.263 20 N -0.067 5.067 21 N -0.240 5.240 22 H 0.468 0.532 23 N -0.296 5.296 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.388 0.612 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -12.053 3.795 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.050 6.050 3 C -0.223 4.223 4 C -0.141 4.141 5 C 0.142 3.858 6 H 0.126 0.874 7 N -0.402 5.402 8 C 0.359 3.641 9 O -0.458 6.458 10 C -0.578 4.578 11 H 0.089 0.911 12 C -0.132 4.132 13 N -0.395 5.395 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.188 1.188 18 C -0.104 4.104 19 N -0.136 5.136 20 N -0.063 5.063 21 N -0.085 5.085 22 H 0.321 0.679 23 N -0.148 5.148 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.221 0.779 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.078 -12.239 4.381 13.165 hybrid contribution -1.116 1.490 -0.573 1.948 sum 0.962 -10.750 3.808 11.445 Atomic orbital electron populations 1.23343 0.94149 1.06103 1.05171 1.86721 1.07482 1.12654 1.98168 1.23368 0.99633 0.92933 1.06413 1.21507 0.93431 0.94950 1.04181 1.18670 0.81347 0.92618 0.93187 0.87384 1.46267 1.72862 1.11217 1.09894 1.18313 0.77132 0.78639 0.90041 1.90624 1.57075 1.60615 1.37468 1.20863 1.46293 0.96308 0.94291 0.91128 1.25705 0.93918 0.96758 0.96822 1.70020 1.34598 1.06782 1.28114 0.86360 0.79583 0.78541 0.82334 1.19758 1.20488 1.18752 1.26580 1.00613 0.98269 0.84925 1.75789 0.94140 1.18135 1.25567 1.78864 1.20199 1.13317 0.93908 1.47731 1.06716 1.43830 1.10174 0.67891 1.74706 0.91058 1.21213 1.27814 0.90526 0.90296 0.88418 0.89648 0.88642 0.89842 0.90236 0.77891 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.76 101.05 1.09 -0.05 16 2 S -0.28 -3.41 22.38 -107.50 -2.41 -5.82 16 3 C -0.08 -1.00 5.83 37.16 0.22 -0.78 16 4 C -0.10 -1.43 4.74 -26.73 -0.13 -1.56 16 5 C 0.25 4.70 2.51 -69.08 -0.17 4.53 16 6 H 0.11 2.18 7.58 -51.93 -0.39 1.79 16 7 N -0.75 -15.79 4.51 -56.34 -0.25 -16.05 16 8 C 0.55 15.10 7.70 -12.98 -0.10 15.00 16 9 O -0.58 -17.96 14.71 5.20 0.08 -17.88 16 10 C -0.54 -14.88 9.54 -35.63 -0.34 -15.22 16 11 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 12 C 0.09 2.41 5.49 -17.37 -0.10 2.32 16 13 N -0.77 -22.64 11.85 55.55 0.66 -21.98 16 14 Si 0.91 19.90 29.56 -169.99 -5.03 14.88 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 18 C 0.18 3.50 7.16 -156.62 -1.12 2.38 16 19 N -0.26 -5.13 12.50 32.45 0.41 -4.72 16 20 N -0.07 -1.15 13.48 60.35 0.81 -0.34 16 21 N -0.24 -3.49 7.91 60.34 0.48 -3.01 16 22 H 0.47 4.27 8.96 -340.53 -3.05 1.21 16 23 N -0.30 -5.29 12.36 32.47 0.40 -4.89 16 24 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.09 1.34 7.75 -51.92 -0.40 0.93 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.39 7.34 8.58 -40.82 -0.35 6.99 16 32 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 302.19 15.07 4.55 4.55 Total: -1.00 -35.50 302.19 -7.23 -42.73 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.28 Total: 5.91 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.65 Total: 6.61 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 2.50 Total: -50.99 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.08 Total: -17.88 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.41 Total: -5.82 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.50 -7.23 -42.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557589145.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.597 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds