Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 102.99980 * 2 1 4 4 C 1.53002 * 109.47541 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47315 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47464 * 54.99825 * 5 4 3 7 7 N 1.46506 * 109.46839 * 294.99636 * 5 4 3 8 8 C 1.34781 * 119.99731 * 155.00237 * 7 5 4 9 9 O 1.21690 * 120.00229 * 359.97438 * 8 7 5 10 10 C 1.46376 * 119.99711 * 180.02562 * 8 7 5 11 11 H 1.07993 * 120.00240 * 353.93170 * 10 8 7 12 12 C 1.40050 * 119.99582 * 173.94057 * 10 8 7 13 13 N 1.30668 * 120.00567 * 6.14347 * 12 10 8 14 14 Si 1.86808 * 119.99763 * 186.14676 * 12 10 8 15 15 H 1.48495 * 109.47147 * 94.98158 * 14 12 10 16 16 H 1.48500 * 109.46953 * 214.98191 * 14 12 10 17 17 H 1.48501 * 109.46800 * 334.98471 * 14 12 10 18 18 C 1.50701 * 109.47130 * 175.00445 * 5 4 3 19 19 N 1.33315 * 126.55447 * 74.68083 * 18 5 4 20 20 N 1.28994 * 107.35560 * 180.26263 * 19 18 5 21 21 N 1.28781 * 108.72414 * 0.02562 * 20 19 18 22 22 H 0.97003 * 125.44692 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.10711 * 359.97438 * 21 20 19 24 24 H 1.08999 * 109.47187 * 299.99492 * 1 2 3 25 25 H 1.08998 * 109.47403 * 59.99775 * 1 2 3 26 26 H 1.09007 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47052 * 59.99742 * 3 2 1 28 28 H 1.08998 * 109.47313 * 300.00211 * 3 2 1 29 29 H 1.09000 * 109.46808 * 59.99749 * 4 3 2 30 30 H 1.08998 * 109.47006 * 300.00420 * 4 3 2 31 31 H 0.96993 * 120.00467 * 335.00402 * 7 5 4 32 32 H 0.96998 * 120.00545 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4308 0.0013 6 1 3.5934 3.9171 0.8430 7 7 3.6279 4.0383 -1.2506 8 6 3.3508 5.3564 -1.2981 9 8 3.4809 6.0418 -0.3010 10 6 2.8922 5.9632 -2.5487 11 1 2.8694 5.3783 -3.4562 12 6 2.4833 7.3025 -2.5684 13 7 2.6232 8.0442 -1.5017 14 14 1.7376 8.0287 -4.1196 15 1 0.2569 7.9466 -4.0424 16 1 2.1485 9.4499 -4.2479 17 1 2.2146 7.2667 -5.3016 18 6 5.5785 3.6019 0.1256 19 7 6.4842 3.3911 -0.8296 20 7 7.6434 3.6432 -0.3231 21 7 7.4894 4.0000 0.9046 22 1 8.2040 4.2444 1.5134 23 7 6.2340 3.9805 1.1953 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8031 2.2371 -0.8899 29 1 4.1616 1.4703 -0.8891 30 1 4.1608 1.4705 0.8908 31 1 3.5239 3.4919 -2.0452 32 1 2.3396 8.9717 -1.5152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557589145.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = 47.394687 kcal Electronic energy + Delta-G solvation = -18464.402356 eV Core-core repulsion = 15394.969997 eV Total energy + Delta-G solvation = -3069.432359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.41980 -39.76714 -37.07848 -35.08247 -34.61473 -33.71385 -32.86971 -29.81142 -29.02834 -27.45195 -25.51485 -24.08118 -22.74950 -21.64655 -19.92275 -19.26534 -18.03139 -17.49780 -17.39791 -16.61419 -16.31596 -15.98181 -15.43538 -15.02282 -14.64174 -14.50074 -14.21935 -14.07626 -13.88519 -13.34465 -13.11754 -12.81985 -12.71922 -12.57325 -12.55125 -12.27705 -12.18404 -12.03490 -12.00254 -11.30674 -10.93859 -10.92542 -9.87847 -9.70414 -8.64131 -8.30360 -6.84388 0.16694 0.70487 1.09099 1.40788 1.41219 1.54229 1.57304 1.68427 2.24327 2.44111 2.87732 2.92987 3.51549 3.65955 3.85809 3.95742 4.00899 4.37822 4.40350 4.46499 4.51838 4.60873 4.67656 4.90615 4.93851 5.05953 5.33799 5.69180 5.88371 6.10729 6.25278 6.88078 7.24691 7.49787 8.47527 8.66228 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.006908 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.386844 B = 4052.226482 C = 6019.665797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.292 6.292 3 C -0.071 4.071 4 C -0.084 4.084 5 C 0.257 3.743 6 H 0.087 0.913 7 N -0.733 5.733 8 C 0.545 3.455 9 O -0.624 6.624 10 C -0.569 4.569 11 H 0.087 0.913 12 C 0.032 3.968 13 N -0.820 5.820 14 Si 0.992 3.008 15 H -0.260 1.260 16 H -0.276 1.276 17 H -0.250 1.250 18 C 0.165 3.835 19 N -0.288 5.288 20 N -0.066 5.066 21 N -0.209 5.209 22 H 0.490 0.510 23 N -0.306 5.306 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.400 0.600 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -13.048 2.806 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.066 6.066 3 C -0.220 4.220 4 C -0.124 4.124 5 C 0.145 3.855 6 H 0.105 0.895 7 N -0.387 5.387 8 C 0.349 3.651 9 O -0.510 6.510 10 C -0.605 4.605 11 H 0.105 0.895 12 C -0.183 4.183 13 N -0.449 5.449 14 Si 0.812 3.188 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.173 1.173 18 C -0.120 4.120 19 N -0.160 5.160 20 N -0.061 5.061 21 N -0.059 5.059 22 H 0.348 0.652 23 N -0.158 5.158 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.235 0.765 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.700 -13.298 3.389 13.828 hybrid contribution -0.911 1.731 -0.168 1.963 sum 0.788 -11.568 3.221 12.034 Atomic orbital electron populations 1.23444 0.91430 1.07547 1.05729 1.86743 1.10502 1.11184 1.98205 1.23235 0.98815 0.94022 1.05890 1.21378 0.94254 0.91740 1.05017 1.18749 0.81108 0.94771 0.90858 0.89549 1.45819 1.71803 1.09638 1.11435 1.18545 0.76761 0.80190 0.89569 1.90581 1.59103 1.62440 1.38892 1.21396 1.46694 0.97324 0.95115 0.89462 1.26891 0.93740 0.96992 1.00681 1.70177 1.36131 1.07463 1.31168 0.85078 0.78869 0.77471 0.77368 1.18499 1.20109 1.17316 1.26594 1.00916 0.99104 0.85425 1.75761 0.94648 1.19399 1.26236 1.78780 1.19451 1.13308 0.94564 1.47758 1.06535 1.41744 1.09880 0.65168 1.74660 0.92116 1.21275 1.27767 0.89824 0.89925 0.86496 0.89800 0.89564 0.89331 0.88917 0.76510 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.76 113.37 1.22 -0.70 16 2 S -0.29 -6.78 22.38 -56.49 -1.26 -8.05 16 3 C -0.07 -1.85 5.83 71.98 0.42 -1.43 16 4 C -0.08 -2.34 4.74 30.59 0.15 -2.19 16 5 C 0.26 9.60 2.51 44.24 0.11 9.71 16 6 H 0.09 3.61 7.58 -2.39 -0.02 3.60 16 7 N -0.73 -31.34 4.51 -450.39 -2.03 -33.37 16 8 C 0.54 30.36 7.70 86.36 0.66 31.02 16 9 O -0.62 -40.28 14.71 -4.32 -0.06 -40.35 16 10 C -0.57 -31.50 9.54 24.83 0.24 -31.26 16 11 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 12 C 0.03 1.77 5.49 85.31 0.47 2.24 16 13 N -0.82 -49.47 11.85 21.84 0.26 -49.21 16 14 Si 0.99 40.53 29.56 68.60 2.03 42.56 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 18 C 0.16 6.35 7.16 138.55 0.99 7.34 16 19 N -0.29 -11.09 12.50 -51.26 -0.64 -11.73 16 20 N -0.07 -2.18 13.48 37.02 0.50 -1.69 16 21 N -0.21 -5.84 7.91 37.00 0.29 -5.55 16 22 H 0.49 8.09 8.96 -347.68 -3.12 4.98 16 23 N -0.31 -10.78 12.36 -51.20 -0.63 -11.41 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.38 7.75 -2.39 -0.02 2.36 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.40 15.10 8.58 -92.71 -0.80 14.31 16 32 H 0.27 15.00 8.29 -92.71 -0.77 14.24 16 Total: -1.00 -77.64 302.19 -0.03 -77.67 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -2.74 Total: 26.39 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 4.26 Total: 14.73 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -2.26 Total: -112.96 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.06 Total: -40.35 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -1.26 Total: -8.05 kcal Total: -77.64 -0.03 -77.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557589145.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.069 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds