Wall clock time and date at job start Mon Mar 30 2020 01:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48506 * 109.46872 * 240.00230 * 3 2 1 5 5 H 1.48494 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47008 * 120.00353 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 C 1.36603 * 120.19043 * 89.99640 * 13 12 11 15 15 O 1.35891 * 119.56707 * 359.97438 * 14 13 12 16 16 C 1.39805 * 120.86207 * 179.97438 * 14 13 12 17 17 C 1.36015 * 120.93687 * 0.02562 * 16 14 13 18 18 C 1.40546 * 119.72790 * 359.97438 * 17 16 14 19 19 C 1.40535 * 121.22278 * 180.02562 * 18 17 16 20 20 C 1.36113 * 119.66496 * 179.15746 * 19 18 17 21 21 C 1.39370 * 121.00137 * 0.89157 * 20 19 18 22 22 C 1.36094 * 120.98310 * 359.39064 * 21 20 19 23 23 C 1.40418 * 120.18851 * 269.72043 * 13 12 11 24 24 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 27 27 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 28 28 H 0.96700 * 113.99792 * 89.99593 * 15 14 13 29 29 H 1.08003 * 119.53091 * 179.97438 * 16 14 13 30 30 H 1.08002 * 120.13514 * 179.97438 * 17 16 14 31 31 H 1.07997 * 120.16284 * 359.95070 * 19 18 17 32 32 H 1.08001 * 119.49762 * 180.30293 * 20 19 18 33 33 H 1.08000 * 119.51322 * 179.40315 * 21 20 19 34 34 H 1.07996 * 120.17015 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 6 2.6423 -6.5845 1.1789 15 8 2.1980 -6.0644 2.3531 16 6 3.5504 -7.6474 1.1948 17 6 4.0136 -8.1887 0.0362 18 6 3.5754 -7.6758 -1.1968 19 6 4.0331 -8.2116 -2.4127 20 6 3.5747 -7.7018 -3.5886 21 6 2.6701 -6.6417 -3.6072 22 6 2.2092 -6.0935 -2.4499 23 6 2.6502 -6.6018 -1.2156 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5896 -4.9744 0.8887 27 1 0.5902 -4.9740 -0.8913 28 1 1.3977 -6.4876 2.6929 29 1 3.8895 -8.0437 2.1405 30 1 4.7152 -9.0093 0.0636 31 1 4.7352 -9.0322 -2.4140 32 1 3.9245 -8.1188 -4.5214 33 1 2.3295 -6.2496 -4.5541 34 1 1.5081 -5.2727 -2.4797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558554282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:29 Heat of formation + Delta-G solvation = -40.414120 kcal Electronic energy + Delta-G solvation = -19778.663533 eV Core-core repulsion = 16641.227139 eV Total energy + Delta-G solvation = -3137.436394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62068 -38.10381 -37.12306 -35.17201 -34.10690 -32.45761 -31.55810 -29.83549 -28.98382 -26.75194 -24.86001 -23.21247 -22.79314 -20.77043 -19.56548 -18.60468 -17.47624 -17.06546 -16.63704 -15.71987 -15.28658 -14.75956 -14.56201 -14.19275 -13.94713 -13.84103 -13.36672 -13.19705 -12.99145 -12.73881 -12.29887 -11.96418 -11.47668 -11.22891 -11.15416 -11.02614 -10.91621 -10.80155 -10.43805 -10.25243 -10.16854 -9.79375 -8.80593 -8.46826 -7.87332 -7.49363 -7.44114 -6.14244 -4.59334 0.53202 0.99626 2.05287 2.91931 3.19222 3.23559 3.25994 4.05322 4.16458 4.31278 4.60876 4.63174 4.85649 4.88038 5.03357 5.14488 5.24263 5.27624 5.41218 5.44111 5.71818 5.77200 5.93247 6.00821 6.19353 6.20228 6.27737 6.40540 6.49299 6.56215 6.72367 6.85083 6.99501 7.47664 7.79279 7.97665 8.13108 8.37922 9.06699 9.58367 10.64088 10.82595 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.004911 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.268443 B = 5700.148447 C = 6327.880469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.582 6.582 11 N -0.756 5.756 12 C 0.177 3.823 13 C -0.103 4.103 14 C 0.118 3.882 15 O -0.489 6.489 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.061 4.061 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.027 4.027 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.388 0.612 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -16.805 -2.682 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.465 6.465 11 N -0.412 5.412 12 C 0.052 3.948 13 C -0.104 4.104 14 C 0.072 3.928 15 O -0.299 6.299 16 C -0.155 4.155 17 C -0.115 4.115 18 C -0.061 4.061 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.112 4.112 23 C -0.028 4.028 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.244 0.756 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.006 -16.313 -2.732 17.963 hybrid contribution 0.607 0.449 0.121 0.764 sum 7.613 -15.864 -2.611 17.789 Atomic orbital electron populations 1.70010 1.07027 1.27285 1.35485 1.25690 0.94603 1.00199 0.92614 0.86444 0.79825 0.81073 0.79453 1.19309 1.20566 1.19288 1.20843 0.93561 0.89335 1.54354 0.91530 1.18211 0.87162 0.82289 0.76246 1.90591 1.14068 1.86730 1.55144 1.46114 1.08560 1.03894 1.82599 1.19603 0.91930 0.81971 1.01248 1.20397 0.99530 0.98677 0.91815 1.18003 0.96230 0.93275 0.85254 1.84907 1.47456 1.61621 1.35877 1.21116 0.99017 0.96333 0.99031 1.20846 0.99745 0.99792 0.91145 1.18086 0.97685 0.96455 0.93914 1.20937 1.00158 1.00117 0.91637 1.20840 0.97736 0.96994 0.97978 1.20878 0.97830 0.96609 0.98449 1.21289 0.99390 0.99246 0.91314 1.17839 0.96483 0.95267 0.93182 0.92111 0.78792 0.92287 0.92506 0.75646 0.85439 0.85381 0.85817 0.86205 0.85937 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.41 11.83 55.55 0.66 -22.75 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 3 Si 0.91 20.58 29.56 -169.99 -5.02 15.55 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -15.79 9.54 -35.63 -0.34 -16.13 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.56 16.24 7.75 -12.99 -0.10 16.14 16 10 O -0.58 -19.10 15.02 5.20 0.08 -19.02 16 11 N -0.76 -17.78 5.54 -62.90 -0.35 -18.13 16 12 C 0.18 3.56 5.09 -5.19 -0.03 3.54 16 13 C -0.10 -1.71 5.27 -104.39 -0.55 -2.26 16 14 C 0.12 1.76 6.63 -39.59 -0.26 1.50 16 15 O -0.49 -7.26 12.44 -19.40 -0.24 -7.50 16 16 C -0.14 -1.68 9.88 -39.79 -0.39 -2.07 16 17 C -0.10 -1.12 9.76 -39.51 -0.39 -1.50 16 18 C -0.06 -0.81 5.74 -106.81 -0.61 -1.43 16 19 C -0.11 -1.23 9.77 -39.48 -0.39 -1.62 16 20 C -0.12 -1.29 9.95 -39.92 -0.40 -1.69 16 21 C -0.12 -1.51 9.95 -39.93 -0.40 -1.90 16 22 C -0.09 -1.43 9.28 -39.47 -0.37 -1.80 16 23 C -0.03 -0.42 5.74 -106.84 -0.61 -1.03 16 24 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 25 H 0.38 8.39 8.44 -40.82 -0.34 8.04 16 26 H 0.06 1.24 7.49 -51.93 -0.39 0.85 16 27 H 0.06 1.17 6.41 -51.93 -0.33 0.84 16 28 H 0.39 3.92 9.06 45.56 0.41 4.33 16 29 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 2.23 6.36 -52.49 -0.33 1.89 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -36.11 299.73 -7.94 -44.04 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -2.65 Total: 11.13 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -4.93 Total: -7.84 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.31 Total: -40.87 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.16 Total: -26.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.11 -7.94 -44.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558554282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.631 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds