Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48506 * 109.46872 * 240.00230 * 3 2 1 5 5 H 1.48494 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47008 * 120.00353 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 C 1.36603 * 120.19043 * 89.99640 * 13 12 11 15 15 O 1.35891 * 119.56707 * 359.97438 * 14 13 12 16 16 C 1.39805 * 120.86207 * 179.97438 * 14 13 12 17 17 C 1.36015 * 120.93687 * 0.02562 * 16 14 13 18 18 C 1.40546 * 119.72790 * 359.97438 * 17 16 14 19 19 C 1.40535 * 121.22278 * 180.02562 * 18 17 16 20 20 C 1.36113 * 119.66496 * 179.15746 * 19 18 17 21 21 C 1.39370 * 121.00137 * 0.89157 * 20 19 18 22 22 C 1.36094 * 120.98310 * 359.39064 * 21 20 19 23 23 C 1.40418 * 120.18851 * 269.72043 * 13 12 11 24 24 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 27 27 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 28 28 H 0.96700 * 113.99792 * 89.99593 * 15 14 13 29 29 H 1.08003 * 119.53091 * 179.97438 * 16 14 13 30 30 H 1.08002 * 120.13514 * 179.97438 * 17 16 14 31 31 H 1.07997 * 120.16284 * 359.95070 * 19 18 17 32 32 H 1.08001 * 119.49762 * 180.30293 * 20 19 18 33 33 H 1.08000 * 119.51322 * 179.40315 * 21 20 19 34 34 H 1.07996 * 120.17015 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 6 2.6423 -6.5845 1.1789 15 8 2.1980 -6.0644 2.3531 16 6 3.5504 -7.6474 1.1948 17 6 4.0136 -8.1887 0.0362 18 6 3.5754 -7.6758 -1.1968 19 6 4.0331 -8.2116 -2.4127 20 6 3.5747 -7.7018 -3.5886 21 6 2.6701 -6.6417 -3.6072 22 6 2.2092 -6.0935 -2.4499 23 6 2.6502 -6.6018 -1.2156 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5896 -4.9744 0.8887 27 1 0.5902 -4.9740 -0.8913 28 1 1.3977 -6.4876 2.6929 29 1 3.8895 -8.0437 2.1405 30 1 4.7152 -9.0093 0.0636 31 1 4.7352 -9.0322 -2.4140 32 1 3.9245 -8.1188 -4.5214 33 1 2.3295 -6.2496 -4.5541 34 1 1.5081 -5.2727 -2.4797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558554282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = -67.522590 kcal Electronic energy + Delta-G solvation = -19779.839044 eV Core-core repulsion = 16641.227139 eV Total energy + Delta-G solvation = -3138.611905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69666 -39.41352 -39.02252 -36.21599 -35.74299 -34.58400 -33.14161 -30.87551 -30.20057 -28.67952 -26.54427 -24.23572 -23.81539 -22.17265 -21.48729 -19.66649 -19.37306 -18.16150 -17.89766 -17.40577 -16.86381 -16.18166 -15.99955 -15.74553 -15.27864 -15.18165 -14.67461 -14.42445 -14.29649 -14.04343 -13.95872 -13.27423 -13.17220 -13.07110 -12.68943 -12.65589 -12.31128 -12.08034 -12.02686 -11.90986 -11.34048 -10.93990 -10.88378 -9.92829 -9.51834 -9.46382 -8.80461 -8.30096 -6.88550 -0.49257 -0.00280 1.01264 1.38015 1.42065 1.53808 1.93935 2.24350 2.44648 3.00102 3.21940 3.38892 3.56030 3.57913 3.86994 3.92924 3.99125 4.18894 4.34217 4.43217 4.52755 4.56319 4.64338 4.84841 5.00084 5.13138 5.21153 5.27685 5.28744 5.41734 5.58912 5.66074 5.81481 5.83910 6.05005 6.14285 6.23347 6.80120 6.83748 7.48361 8.45118 8.64469 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.004911 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.268443 B = 5700.148447 C = 6327.880469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.540 3.460 10 O -0.632 6.632 11 N -0.743 5.743 12 C 0.187 3.813 13 C -0.139 4.139 14 C 0.123 3.877 15 O -0.509 6.509 16 C -0.147 4.147 17 C -0.071 4.071 18 C -0.080 4.080 19 C -0.096 4.096 20 C -0.123 4.123 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.039 4.039 24 H 0.276 0.724 25 H 0.388 0.612 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.406 0.594 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.136 0.864 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.122 -18.529 -3.153 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.612 4.612 8 H 0.101 0.899 9 C 0.344 3.656 10 O -0.520 6.520 11 N -0.397 5.397 12 C 0.063 3.937 13 C -0.140 4.140 14 C 0.078 3.922 15 O -0.322 6.322 16 C -0.165 4.165 17 C -0.089 4.089 18 C -0.080 4.080 19 C -0.113 4.113 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.155 4.155 23 C -0.040 4.040 24 H 0.086 0.914 25 H 0.221 0.779 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.173 0.827 30 H 0.191 0.809 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.517 -18.094 -3.198 21.171 hybrid contribution -0.463 0.823 0.227 0.971 sum 10.055 -17.271 -2.971 20.204 Atomic orbital electron populations 1.70177 1.09509 1.29082 1.36242 1.26979 0.95566 1.04885 0.91091 0.85057 0.78236 0.74614 0.80267 1.17812 1.19483 1.17935 1.21375 0.94561 0.90166 1.55049 0.89912 1.18609 0.86834 0.84123 0.76031 1.90537 1.16034 1.87877 1.57503 1.45801 1.08796 1.04131 1.80948 1.19450 0.92634 0.82185 0.99420 1.20060 1.01277 0.99051 0.93636 1.18293 0.96087 0.93430 0.84368 1.84827 1.48631 1.62752 1.35988 1.21331 0.98622 0.95688 1.00891 1.21354 0.98382 0.99402 0.89739 1.18427 0.97541 0.96067 0.95968 1.21421 0.99408 1.00054 0.90427 1.21225 0.96900 0.96110 0.99802 1.21172 0.97155 0.96503 0.97960 1.21140 1.01152 1.00260 0.92913 1.17949 0.97345 0.96308 0.92363 0.91449 0.77926 0.94013 0.94315 0.73552 0.82659 0.80919 0.81661 0.82621 0.84581 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.84 11.83 21.84 0.26 -51.58 16 2 C 0.03 1.73 5.50 85.31 0.47 2.20 16 3 Si 1.00 42.47 29.56 68.60 2.03 44.50 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.58 -34.50 9.54 24.83 0.24 -34.27 16 8 H 0.08 4.52 7.85 -2.91 -0.02 4.49 16 9 C 0.54 33.42 7.75 86.36 0.67 34.09 16 10 O -0.63 -44.40 15.02 -4.30 -0.06 -44.46 16 11 N -0.74 -37.38 5.54 -471.13 -2.61 -39.99 16 12 C 0.19 8.24 5.09 85.63 0.44 8.68 16 13 C -0.14 -4.84 5.27 -19.71 -0.10 -4.94 16 14 C 0.12 3.68 6.63 22.27 0.15 3.83 16 15 O -0.51 -15.40 12.44 -92.32 -1.15 -16.55 16 16 C -0.15 -3.22 9.88 22.13 0.22 -3.01 16 17 C -0.07 -1.34 9.76 22.32 0.22 -1.12 16 18 C -0.08 -1.90 5.74 -21.28 -0.12 -2.03 16 19 C -0.10 -1.71 9.77 22.34 0.22 -1.49 16 20 C -0.12 -2.28 9.95 22.05 0.22 -2.06 16 21 C -0.11 -2.70 9.95 22.04 0.22 -2.48 16 22 C -0.14 -4.38 9.28 22.34 0.21 -4.17 16 23 C -0.04 -1.23 5.74 -21.30 -0.12 -1.35 16 24 H 0.28 15.71 8.29 -92.71 -0.77 14.94 16 25 H 0.39 18.06 8.44 -92.71 -0.78 17.28 16 26 H 0.04 1.93 7.49 -2.39 -0.02 1.91 16 27 H 0.04 1.81 6.41 -2.39 -0.02 1.79 16 28 H 0.41 8.52 9.06 -74.06 -0.67 7.84 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.10 3.82 6.36 -2.91 -0.02 3.80 16 Total: -1.00 -84.09 299.73 1.08 -83.02 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.29 Total: 33.19 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 2.91 Total: -8.12 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -2.35 Total: -91.57 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -1.21 Total: -61.01 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -84.09 1.08 -83.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558554282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal (2) G-P(sol) polarization free energy of solvation -84.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds