Wall clock time and date at job start Mon Mar 30 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35983 * 116.99815 * 2 1 4 4 N 1.30321 * 121.66637 * 0.24787 * 3 2 1 5 5 S 1.69565 * 107.27581 * 180.25052 * 4 3 2 6 6 C 1.72014 * 95.85539 * 359.72702 * 5 4 3 7 7 C 1.35372 * 105.61731 * 0.02562 * 6 5 4 8 8 N 1.40957 * 122.70819 * 180.02562 * 7 6 5 9 9 C 1.34769 * 120.00295 * 5.90619 * 8 7 6 10 10 O 1.21613 * 120.00011 * 354.65509 * 9 8 7 11 11 N 1.34776 * 120.00092 * 174.65313 * 9 8 7 12 12 C 1.46503 * 119.99965 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47258 * 179.71912 * 12 11 9 14 14 C 1.50694 * 109.47190 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00228 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99819 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00283 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99757 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46927 * 119.99718 * 18 16 14 21 21 H 1.48501 * 109.46930 * 239.99580 * 18 16 14 22 22 H 1.09006 * 109.47449 * 60.00525 * 1 2 3 23 23 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47615 * 300.00036 * 1 2 3 25 25 H 1.08001 * 127.19197 * 180.02562 * 6 5 4 26 26 H 0.97005 * 119.99596 * 185.91375 * 8 7 6 27 27 H 0.96998 * 120.00404 * 359.71970 * 11 9 8 28 28 H 1.08992 * 109.47017 * 299.72184 * 12 11 9 29 29 H 1.09007 * 109.46928 * 59.72259 * 12 11 9 30 30 H 1.08996 * 109.47084 * 300.00533 * 13 12 11 31 31 H 1.09010 * 109.46629 * 59.99848 * 13 12 11 32 32 H 0.96991 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 7 1.3686 2.3248 0.0048 5 16 2.4897 3.5969 -0.0041 6 6 3.8895 2.5972 -0.0063 7 6 3.4284 1.3245 -0.0006 8 7 4.2841 0.2043 0.0002 9 6 5.6161 0.3739 0.1153 10 8 6.0882 1.4947 0.1206 11 7 6.4250 -0.6985 0.2245 12 6 7.8730 -0.5141 0.3502 13 6 8.5530 -1.8799 0.4646 14 6 10.0424 -1.6902 0.5932 15 1 10.4621 -0.6951 0.5930 16 6 10.8695 -2.7872 0.7101 17 7 10.3586 -3.9990 0.7099 18 14 12.7159 -2.5521 0.8689 19 1 13.0344 -1.1018 0.8419 20 1 13.1809 -3.1377 2.1519 21 1 13.4002 -3.2298 -0.2615 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 4.9208 2.9180 -0.0111 26 1 3.9141 -0.6886 -0.0822 27 1 6.0482 -1.5923 0.2244 28 1 8.2505 0.0073 -0.5293 29 1 8.0882 0.0747 1.2420 30 1 8.1754 -2.4013 1.3441 31 1 8.3377 -2.4687 -0.4272 32 1 10.9404 -4.7706 0.7925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563237241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:23 Heat of formation + Delta-G solvation = -20.653559 kcal Electronic energy + Delta-G solvation = -17784.173679 eV Core-core repulsion = 14679.497775 eV Total energy + Delta-G solvation = -3104.675904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91376 -39.58068 -37.03046 -35.05011 -34.28527 -32.91289 -30.53693 -29.10218 -28.19312 -25.08170 -24.03639 -21.51690 -20.88337 -20.33827 -19.42023 -17.74580 -17.42778 -16.53848 -16.45159 -15.72734 -15.41583 -15.10076 -14.54268 -14.45918 -13.91805 -13.72043 -13.53769 -13.23773 -12.32961 -12.31529 -11.45649 -11.39180 -11.23973 -11.14884 -11.09584 -10.95350 -10.64719 -10.38655 -9.92236 -9.62995 -9.29536 -9.29294 -8.66872 -8.43517 -7.81916 -6.12775 -4.15725 0.65085 1.28102 1.58880 2.22964 2.78958 2.86717 3.26650 3.34545 3.39515 3.41681 4.31582 4.46216 4.57391 4.87942 4.97159 5.19390 5.24677 5.29629 5.72439 5.88005 6.16242 6.29916 6.34031 6.67908 6.80378 6.83380 7.01530 7.49777 7.56852 7.85716 8.10409 8.25498 8.68142 8.90571 9.49445 10.98884 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.003224 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.557646 B = 8681.889263 C = 9354.733094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.299 3.701 4 N -0.524 5.524 5 S 0.283 5.717 6 C -0.215 4.215 7 C 0.089 3.911 8 N -0.661 5.661 9 C 0.701 3.299 10 O -0.579 6.579 11 N -0.728 5.728 12 C 0.138 3.862 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.224 0.776 26 H 0.412 0.588 27 H 0.397 0.603 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.121 8.694 -1.743 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.080 3.920 4 N -0.362 5.362 5 S 0.429 5.571 6 C -0.366 4.366 7 C -0.023 4.023 8 N -0.309 5.309 9 C 0.401 3.599 10 O -0.458 6.458 11 N -0.381 5.381 12 C 0.016 3.984 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.240 0.760 26 H 0.248 0.752 27 H 0.231 0.769 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.847 10.767 -1.702 22.643 hybrid contribution 1.441 -2.442 0.065 2.836 sum -18.405 8.325 -1.637 20.267 Atomic orbital electron populations 1.22965 0.76473 1.03574 1.02567 1.86224 1.23202 1.22463 1.88512 1.19689 0.88629 0.85912 0.97780 1.76438 1.26623 1.01027 1.32151 1.83868 0.90127 1.12067 1.71006 1.27142 1.07756 0.94969 1.06721 1.16815 0.86376 0.88632 1.10453 1.42351 1.04699 1.07760 1.76088 1.15936 0.79955 0.85672 0.78308 1.90689 1.74233 1.22679 1.58248 1.45548 1.08829 1.07016 1.76674 1.21711 0.74411 1.01457 1.00806 1.19345 0.95461 0.89863 0.97897 1.21066 0.91025 0.93125 1.50783 0.92101 1.24999 0.99179 0.95132 0.94988 1.69958 1.35378 0.97789 1.50131 0.86450 0.84963 0.78434 0.77681 1.19536 1.20928 1.20934 0.92132 0.88003 0.92110 0.75960 0.75186 0.76917 0.92369 0.92372 0.95854 0.95856 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.47 101.05 1.06 1.37 16 2 O -0.30 -3.29 10.13 -19.69 -0.20 -3.49 16 3 C 0.30 3.80 7.44 -18.03 -0.13 3.66 16 4 N -0.52 -6.57 11.13 29.07 0.32 -6.25 16 5 S 0.28 3.17 23.71 -107.50 -2.55 0.62 16 6 C -0.22 -2.90 10.09 29.71 0.30 -2.60 16 7 C 0.09 1.22 6.62 -84.52 -0.56 0.66 16 8 N -0.66 -8.96 5.47 -14.88 -0.08 -9.04 16 9 C 0.70 11.67 8.52 -86.93 -0.74 10.93 16 10 O -0.58 -11.14 13.17 5.27 0.07 -11.07 16 11 N -0.73 -12.14 5.56 -65.22 -0.36 -12.50 16 12 C 0.14 2.82 5.61 -4.04 -0.02 2.80 16 13 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 14 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.22 3.31 5.52 -52.49 -0.29 3.02 16 26 H 0.41 4.53 8.44 -40.82 -0.34 4.19 16 27 H 0.40 5.66 8.49 -40.82 -0.35 5.31 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -31.03 297.22 -6.74 -37.77 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.48 Total: 4.39 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.65 Total: 4.03 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.62 Total: -52.77 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.13 Total: -14.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.55 Total: 0.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.03 -6.74 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563237241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.114 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds