Wall clock time and date at job start Mon Mar 30 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35983 * 116.99815 * 2 1 4 4 N 1.30321 * 121.66637 * 0.24787 * 3 2 1 5 5 S 1.69565 * 107.27581 * 180.25052 * 4 3 2 6 6 C 1.72014 * 95.85539 * 359.72702 * 5 4 3 7 7 C 1.35372 * 105.61731 * 0.02562 * 6 5 4 8 8 N 1.40957 * 122.70819 * 180.02562 * 7 6 5 9 9 C 1.34769 * 120.00295 * 5.90619 * 8 7 6 10 10 O 1.21613 * 120.00011 * 354.65509 * 9 8 7 11 11 N 1.34776 * 120.00092 * 174.65313 * 9 8 7 12 12 C 1.46503 * 119.99965 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47258 * 179.71912 * 12 11 9 14 14 C 1.50694 * 109.47190 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00228 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99819 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00283 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99757 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46927 * 119.99718 * 18 16 14 21 21 H 1.48501 * 109.46930 * 239.99580 * 18 16 14 22 22 H 1.09006 * 109.47449 * 60.00525 * 1 2 3 23 23 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47615 * 300.00036 * 1 2 3 25 25 H 1.08001 * 127.19197 * 180.02562 * 6 5 4 26 26 H 0.97005 * 119.99596 * 185.91375 * 8 7 6 27 27 H 0.96998 * 120.00404 * 359.71970 * 11 9 8 28 28 H 1.08992 * 109.47017 * 299.72184 * 12 11 9 29 29 H 1.09007 * 109.46928 * 59.72259 * 12 11 9 30 30 H 1.08996 * 109.47084 * 300.00533 * 13 12 11 31 31 H 1.09010 * 109.46629 * 59.99848 * 13 12 11 32 32 H 0.96991 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 7 1.3686 2.3248 0.0048 5 16 2.4897 3.5969 -0.0041 6 6 3.8895 2.5972 -0.0063 7 6 3.4284 1.3245 -0.0006 8 7 4.2841 0.2043 0.0002 9 6 5.6161 0.3739 0.1153 10 8 6.0882 1.4947 0.1206 11 7 6.4250 -0.6985 0.2245 12 6 7.8730 -0.5141 0.3502 13 6 8.5530 -1.8799 0.4646 14 6 10.0424 -1.6902 0.5932 15 1 10.4621 -0.6951 0.5930 16 6 10.8695 -2.7872 0.7101 17 7 10.3586 -3.9990 0.7099 18 14 12.7159 -2.5521 0.8689 19 1 13.0344 -1.1018 0.8419 20 1 13.1809 -3.1377 2.1519 21 1 13.4002 -3.2298 -0.2615 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 4.9208 2.9180 -0.0111 26 1 3.9141 -0.6886 -0.0822 27 1 6.0482 -1.5923 0.2244 28 1 8.2505 0.0073 -0.5293 29 1 8.0882 0.0747 1.2420 30 1 8.1754 -2.4013 1.3441 31 1 8.3377 -2.4687 -0.4272 32 1 10.9404 -4.7706 0.7925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563237241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:23 Heat of formation + Delta-G solvation = -44.829519 kcal Electronic energy + Delta-G solvation = -17785.222027 eV Core-core repulsion = 14679.497775 eV Total energy + Delta-G solvation = -3105.724252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99956 -40.70501 -38.03443 -36.61503 -35.48223 -34.81277 -31.98392 -30.57793 -28.91319 -26.81761 -25.20101 -23.08063 -22.31754 -21.45940 -20.53744 -18.75180 -18.64147 -18.37287 -17.43411 -16.93484 -16.72685 -16.47553 -16.02609 -15.67229 -15.25095 -15.18882 -14.54740 -14.51615 -14.28205 -13.20023 -12.97765 -12.96028 -12.51071 -12.41510 -12.33188 -12.16957 -12.05020 -11.97600 -11.62158 -11.43280 -11.10553 -10.60286 -10.37429 -9.99071 -8.82659 -8.22720 -6.32519 -0.35934 0.32867 0.61878 1.17851 1.42678 1.43753 1.54283 1.58967 2.02846 2.12881 2.42326 3.12753 3.15117 3.63660 4.16418 4.31640 4.37969 4.47939 4.54126 4.62094 4.72329 4.89026 4.96466 5.21568 5.30168 5.50850 5.61256 5.77219 5.86014 5.97235 6.17940 6.81129 6.89964 7.36455 7.37629 8.89360 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.003224 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.557646 B = 8681.889263 C = 9354.733094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.303 6.303 3 C 0.299 3.701 4 N -0.535 5.535 5 S 0.335 5.665 6 C -0.229 4.229 7 C 0.071 3.929 8 N -0.647 5.647 9 C 0.703 3.297 10 O -0.607 6.607 11 N -0.723 5.723 12 C 0.160 3.840 13 C 0.021 3.979 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.061 0.939 23 H 0.131 0.869 24 H 0.060 0.940 25 H 0.210 0.790 26 H 0.425 0.575 27 H 0.410 0.590 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.828 9.120 -1.773 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.210 6.210 3 C 0.080 3.920 4 N -0.375 5.375 5 S 0.482 5.518 6 C -0.379 4.379 7 C -0.041 4.041 8 N -0.295 5.295 9 C 0.403 3.597 10 O -0.488 6.488 11 N -0.377 5.377 12 C 0.036 3.964 13 C -0.016 4.016 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.080 0.920 23 H 0.149 0.851 24 H 0.079 0.921 25 H 0.227 0.773 26 H 0.263 0.737 27 H 0.246 0.754 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.613 11.184 -1.737 23.516 hybrid contribution 1.536 -2.520 0.066 2.952 sum -19.077 8.664 -1.671 21.019 Atomic orbital electron populations 1.23234 0.74744 1.05535 1.02566 1.86226 1.24884 1.21636 1.88234 1.19588 0.88223 0.86505 0.97636 1.76385 1.27206 1.01443 1.32457 1.83674 0.88065 1.10511 1.69528 1.27101 1.08272 0.95878 1.06666 1.16997 0.86969 0.88550 1.11626 1.42069 1.03532 1.08654 1.75291 1.15926 0.80779 0.84956 0.78075 1.90691 1.75100 1.23646 1.59340 1.45207 1.07519 1.07947 1.77014 1.21183 0.76244 0.98883 1.00088 1.19153 0.94628 0.91385 0.96450 1.21495 0.92779 0.93278 1.50653 0.92070 1.25856 1.03900 0.94844 0.94602 1.70058 1.37088 0.98560 1.50966 0.85410 0.79303 0.78640 0.77776 1.18818 1.20394 1.20389 0.92041 0.85132 0.92150 0.77320 0.73689 0.75444 0.93064 0.93143 0.97241 0.97189 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.47 113.37 1.19 1.64 16 2 O -0.30 -6.18 10.13 -93.36 -0.95 -7.12 16 3 C 0.30 7.16 7.44 85.02 0.63 7.79 16 4 N -0.54 -12.53 11.13 -175.58 -1.95 -14.49 16 5 S 0.33 7.00 23.71 -56.49 -1.34 5.66 16 6 C -0.23 -6.01 10.09 67.16 0.68 -5.33 16 7 C 0.07 1.87 6.62 37.11 0.25 2.12 16 8 N -0.65 -16.96 5.47 -319.24 -1.75 -18.70 16 9 C 0.70 23.06 8.52 179.06 1.53 24.59 16 10 O -0.61 -23.34 13.17 -4.07 -0.05 -23.39 16 11 N -0.72 -23.86 5.56 -478.51 -2.66 -26.52 16 12 C 0.16 6.53 5.61 86.38 0.48 7.02 16 13 C 0.02 1.04 5.09 29.85 0.15 1.19 16 14 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16 18 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.21 6.22 5.52 -2.91 -0.02 6.21 16 26 H 0.43 8.80 8.44 -92.70 -0.78 8.02 16 27 H 0.41 11.43 8.49 -92.71 -0.79 10.64 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -65.13 297.22 -1.18 -66.31 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.39 Total: 16.06 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.60 Total: 10.49 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -6.08 Total: -112.98 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.00 Total: -30.51 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -1.34 Total: 5.66 kcal Total: -65.13 -1.18 -66.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563237241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.482 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds