Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47114 * 156.69956 * 3 2 1 5 5 C 1.36892 * 120.00119 * 112.20017 * 4 3 2 6 6 H 1.07992 * 120.00042 * 137.22735 * 5 4 3 7 7 C 1.39035 * 119.99796 * 317.49860 * 5 4 3 8 8 N 1.31378 * 119.99923 * 21.48968 * 7 5 4 9 9 Si 1.86801 * 119.99864 * 201.48324 * 7 5 4 10 10 H 1.48496 * 109.46891 * 60.00639 * 9 7 5 11 11 H 1.48500 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47022 * 300.00056 * 9 7 5 13 13 C 1.34778 * 120.00229 * 292.20627 * 4 3 2 14 14 O 1.21621 * 120.00223 * 184.00321 * 13 4 3 15 15 C 1.47420 * 119.99701 * 4.00297 * 13 4 3 16 16 C 1.39491 * 120.76154 * 353.68377 * 15 13 4 17 17 N 1.31909 * 121.00547 * 180.02562 * 16 15 13 18 18 C 1.31800 * 122.60224 * 359.97438 * 17 16 15 19 19 C 1.39454 * 120.64957 * 0.02562 * 18 17 16 20 20 N 1.35711 * 134.42797 * 179.97438 * 19 18 17 21 21 C 1.30138 * 109.49924 * 179.26652 * 20 19 18 22 22 N 1.36251 * 110.05529 * 0.65193 * 21 20 19 23 23 H 0.97002 * 126.30143 * 179.41773 * 22 21 20 24 24 C 1.36929 * 107.39862 * 359.44912 * 22 21 20 25 25 H 1.08997 * 109.47600 * 36.70585 * 3 2 1 26 26 H 1.09001 * 109.47587 * 276.69757 * 3 2 1 27 27 H 0.96999 * 120.00112 * 179.97438 * 8 7 5 28 28 H 1.08000 * 119.49484 * 0.02950 * 16 15 13 29 29 H 1.08000 * 119.67370 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.97380 * 180.08352 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2695 -0.5464 5 6 3.7459 2.1595 0.2655 6 1 4.6325 2.6647 -0.0878 7 6 3.2678 2.4088 1.5471 8 7 2.4885 1.5325 2.1395 9 14 3.7337 3.9895 2.4267 10 1 3.2619 5.1539 1.6351 11 1 3.1001 4.0138 3.7695 12 1 5.2097 4.0569 2.5749 13 6 2.9044 1.5606 -1.8483 14 8 3.3723 2.5798 -2.3188 15 6 2.1278 0.6434 -2.7022 16 6 1.6956 -0.5904 -2.2157 17 7 1.0010 -1.4149 -2.9756 18 6 0.6765 -1.1299 -4.2209 19 6 1.0631 0.0797 -4.7972 20 7 0.8903 0.6490 -6.0170 21 6 1.4508 1.8233 -6.0316 22 7 2.0327 2.0784 -4.8262 23 1 2.5213 2.8802 -4.5826 24 6 1.8013 0.9943 -4.0224 25 1 2.9718 -0.8230 -0.6142 26 1 2.9715 -0.1190 1.0206 27 1 2.1553 1.7062 3.0337 28 1 1.9334 -0.8748 -1.2013 29 1 0.1057 -1.8402 -4.8006 30 1 1.4619 2.4935 -6.8784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584455919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = 142.962643 kcal Electronic energy + Delta-G solvation = -20350.718680 eV Core-core repulsion = 17149.986507 eV Total energy + Delta-G solvation = -3200.732173 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.20004 -39.72720 -37.75108 -36.35079 -34.69529 -33.01946 -32.27917 -30.73364 -29.84126 -27.91129 -25.63443 -23.74766 -22.76879 -21.84342 -20.08758 -18.25541 -18.05375 -17.50606 -17.01569 -16.24895 -15.35042 -15.25548 -14.91077 -14.83542 -14.16080 -13.87520 -13.72277 -13.30061 -13.13869 -12.71319 -12.15671 -11.98312 -11.66280 -11.44556 -11.23129 -10.89644 -10.64219 -10.56694 -10.42597 -10.15250 -9.68683 -9.14395 -8.82843 -8.80267 -8.12945 -8.06829 -6.74427 -4.36265 0.72320 1.64762 2.71540 3.04071 3.05696 3.13717 3.15673 3.34729 3.56912 3.65273 3.91615 4.25006 4.29601 4.40819 4.64939 4.73527 4.78911 4.83798 5.17638 5.26935 5.43280 5.54184 5.77133 5.90136 6.24333 6.40016 6.51655 6.68110 7.23920 7.41303 7.78311 7.85958 8.07219 8.23975 8.31614 8.73370 8.88698 9.47887 10.29339 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.006849 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.796194 B = 4087.330699 C = 4887.241827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.221 3.779 3 C 0.175 3.825 4 N -0.423 5.423 5 C -0.323 4.323 6 H 0.104 0.896 7 C 0.053 3.947 8 N -0.863 5.863 9 Si 0.924 3.076 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.507 3.493 14 O -0.575 6.575 15 C -0.152 4.152 16 C 0.052 3.948 17 N -0.480 5.480 18 C 0.174 3.826 19 C -0.020 4.020 20 N -0.484 5.484 21 C 0.252 3.748 22 N -0.576 5.576 23 H 0.437 0.563 24 C 0.123 3.877 25 H 0.102 0.898 26 H 0.161 0.839 27 H 0.280 0.720 28 H 0.217 0.783 29 H 0.162 0.838 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -2.202 -7.792 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.097 4.097 3 C 0.049 3.951 4 N -0.141 5.141 5 C -0.449 4.449 6 H 0.122 0.878 7 C -0.154 4.154 8 N -0.498 5.498 9 Si 0.750 3.250 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.297 3.703 14 O -0.459 6.459 15 C -0.161 4.161 16 C -0.098 4.098 17 N -0.190 5.190 18 C 0.006 3.994 19 C -0.141 4.141 20 N -0.205 5.205 21 C -0.036 4.036 22 N -0.187 5.187 23 H 0.279 0.721 24 C 0.002 3.998 25 H 0.118 0.882 26 H 0.178 0.822 27 H 0.090 0.910 28 H 0.232 0.768 29 H 0.179 0.821 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.686 -2.911 -8.014 8.554 hybrid contribution 1.356 2.440 0.863 2.922 sum 0.671 -0.471 -7.152 7.199 Atomic orbital electron populations 1.81045 1.13230 1.07145 1.10998 1.29114 0.95696 0.93733 0.91142 1.20013 0.80997 0.88180 1.05927 1.43250 1.49040 1.14919 1.06899 1.19420 1.10559 1.19513 0.95437 0.87849 1.25594 0.94806 0.97868 0.97170 1.69671 1.32605 1.32598 1.14939 0.86039 0.79059 0.82128 0.77801 1.19579 1.20750 1.19352 1.17878 0.83429 0.85798 0.83185 1.90554 1.53795 1.28108 1.73477 1.20322 1.05601 0.98013 0.92117 1.25613 0.92935 0.89137 1.02144 1.67781 1.13023 1.33449 1.04710 1.22218 0.94668 0.91893 0.90600 1.20134 1.04405 0.97906 0.91683 1.70418 1.23202 1.06942 1.19897 1.25501 0.94008 0.95090 0.89001 1.43148 1.46068 1.17964 1.11519 0.72150 1.18704 0.99131 0.89286 0.92702 0.88157 0.82177 0.90956 0.76829 0.82065 0.76444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.12 18.40 38.50 0.71 -9.41 16 2 C 0.22 4.66 10.68 -20.76 -0.22 4.44 16 3 C 0.17 3.38 4.70 -6.83 -0.03 3.35 16 4 N -0.42 -9.58 2.68 -151.47 -0.41 -9.99 16 5 C -0.32 -7.81 8.78 -15.00 -0.13 -7.95 16 6 H 0.10 2.56 7.84 -52.49 -0.41 2.15 16 7 C 0.05 1.24 5.44 -17.45 -0.09 1.15 16 8 N -0.86 -20.20 10.12 55.50 0.56 -19.64 16 9 Si 0.92 18.96 29.61 -169.99 -5.03 13.93 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 13 C 0.51 11.58 7.42 -12.52 -0.09 11.48 16 14 O -0.58 -14.10 15.47 5.26 0.08 -14.02 16 15 C -0.15 -3.09 5.69 -104.86 -0.60 -3.68 16 16 C 0.05 0.98 7.64 -17.05 -0.13 0.85 16 17 N -0.48 -8.71 10.30 -12.62 -0.13 -8.84 16 18 C 0.17 2.91 11.25 -17.11 -0.19 2.71 16 19 C -0.02 -0.36 7.27 -84.74 -0.62 -0.98 16 20 N -0.48 -7.65 11.28 -12.01 -0.14 -7.79 16 21 C 0.25 3.22 12.97 -89.56 -1.16 2.05 16 22 N -0.58 -8.93 6.02 -11.50 -0.07 -8.99 16 23 H 0.44 6.40 7.95 -40.82 -0.32 6.08 16 24 C 0.12 2.32 6.93 -83.80 -0.58 1.74 16 25 H 0.10 1.58 5.67 -51.93 -0.29 1.28 16 26 H 0.16 3.16 5.97 -51.93 -0.31 2.85 16 27 H 0.28 6.34 8.31 -40.82 -0.34 6.01 16 28 H 0.22 3.86 1.74 -118.75 -0.21 3.65 16 29 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.22 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 267.54 15.07 4.03 4.03 Total: -1.00 -30.60 267.54 -5.77 -36.37 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.53 Total: 9.19 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: -3.85 Total: 15.16 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.53 Total: -64.65 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.60 -5.77 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584455919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.328 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds