Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46903 * 187.44479 * 3 2 1 5 5 C 1.36774 * 119.99545 * 265.73920 * 4 3 2 6 6 H 1.07997 * 119.99769 * 196.15321 * 5 4 3 7 7 C 1.39114 * 120.00037 * 16.16312 * 5 4 3 8 8 N 1.31319 * 119.99882 * 13.51178 * 7 5 4 9 9 Si 1.86798 * 119.99551 * 193.51215 * 7 5 4 10 10 H 1.48498 * 109.47491 * 60.00043 * 9 7 5 11 11 H 1.48510 * 109.46775 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47445 * 299.99637 * 9 7 5 13 13 C 1.34767 * 120.00250 * 85.74622 * 4 3 2 14 14 O 1.21620 * 120.00012 * 4.05196 * 13 4 3 15 15 C 1.47590 * 120.00150 * 184.05421 * 13 4 3 16 16 C 1.39745 * 121.08423 * 306.98050 * 15 13 4 17 17 C 1.38276 * 119.36844 * 180.02562 * 16 15 13 18 18 N 1.31757 * 121.55758 * 0.02562 * 17 16 15 19 19 C 1.32140 * 121.96473 * 0.02855 * 18 17 16 20 20 N 1.37938 * 133.79509 * 179.97438 * 19 18 17 21 21 H 0.97005 * 126.35678 * 0.27922 * 20 19 18 22 22 C 1.35991 * 107.28333 * 180.02562 * 20 19 18 23 23 N 1.30287 * 110.04406 * 0.02562 * 22 20 19 24 24 C 1.34639 * 109.66661 * 359.97438 * 23 22 20 25 25 H 1.08996 * 109.47662 * 67.44253 * 3 2 1 26 26 H 1.08997 * 109.47546 * 307.44018 * 3 2 1 27 27 H 0.97000 * 119.99650 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.31014 * 0.06616 * 16 15 13 29 29 H 1.08003 * 119.21984 * 180.02562 * 17 16 15 30 30 H 1.08004 * 124.98166 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3706 0.1790 5 6 3.4062 2.1339 -0.9126 6 1 4.0010 3.0276 -0.7950 7 6 2.9556 1.7593 -2.1743 8 7 2.0251 0.8404 -2.2931 9 14 3.6745 2.5634 -3.6995 10 1 5.1367 2.3093 -3.7506 11 1 3.0307 1.9927 -4.9100 12 1 3.4278 4.0269 -3.6504 13 6 3.2384 1.8784 1.4191 14 8 3.0332 1.1766 2.3910 15 6 3.6437 3.2863 1.5979 16 6 4.7865 3.7930 0.9733 17 6 5.1337 5.1175 1.1658 18 7 4.4121 5.9160 1.9259 19 6 3.3220 5.4969 2.5439 20 7 2.4045 6.1024 3.3772 21 1 2.4146 7.0278 3.6679 22 6 1.4801 5.1625 3.7111 23 7 1.7705 4.0279 3.1403 24 6 2.8918 4.1634 2.4073 25 1 2.9715 -0.3934 -0.9490 26 1 2.9716 -0.6239 0.8159 27 1 1.7107 0.5794 -3.1728 28 1 5.3925 3.1561 0.3458 29 1 6.0172 5.5067 0.6816 30 1 0.6297 5.3317 4.3550 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584456585.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = 82.558246 kcal Electronic energy + Delta-G solvation = -20138.006347 eV Core-core repulsion = 16934.654842 eV Total energy + Delta-G solvation = -3203.351504 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.30192 -40.76607 -39.00667 -37.49672 -36.36822 -34.61665 -33.54094 -32.41071 -30.66078 -29.39621 -26.98606 -25.22103 -24.09343 -22.92515 -21.48436 -20.28016 -19.12327 -18.64730 -18.15770 -17.72835 -16.75897 -16.54991 -16.37958 -15.89471 -15.77884 -15.03051 -14.90621 -14.69152 -14.45858 -13.80725 -13.68248 -13.48539 -13.36293 -13.09638 -12.84766 -12.41542 -12.18793 -12.09933 -11.94751 -11.81607 -11.20922 -10.90396 -10.10836 -10.03764 -9.65578 -9.48618 -8.35517 -5.97360 -0.35516 0.25762 1.43708 1.55088 1.63959 1.65034 1.74806 1.87363 2.05529 2.25371 2.37411 2.79655 2.97577 3.08854 3.30824 3.58637 3.68011 3.84822 3.99523 4.24191 4.33574 4.56635 4.71209 4.82918 4.93458 5.07378 5.23855 5.44199 5.59453 5.66608 6.29975 6.32687 6.82625 6.92441 6.96503 7.03609 7.36656 7.77512 8.66442 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.008018 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.533281 B = 3491.234427 C = 4422.048355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.267 3.733 3 C 0.230 3.770 4 N -0.433 5.433 5 C -0.357 4.357 6 H 0.132 0.868 7 C -0.001 4.001 8 N -0.900 5.900 9 Si 0.994 3.006 10 H -0.245 1.245 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.613 6.613 15 C -0.024 4.024 16 C -0.147 4.147 17 C 0.140 3.860 18 N -0.486 5.486 19 C 0.222 3.778 20 N -0.572 5.572 21 H 0.447 0.553 22 C 0.291 3.709 23 N -0.544 5.544 24 C 0.003 3.997 25 H 0.145 0.855 26 H 0.103 0.897 27 H 0.275 0.725 28 H 0.172 0.828 29 H 0.217 0.783 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 10.972 4.003 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.050 4.050 3 C 0.104 3.896 4 N -0.151 5.151 5 C -0.484 4.484 6 H 0.149 0.851 7 C -0.204 4.204 8 N -0.538 5.538 9 Si 0.817 3.183 10 H -0.169 1.169 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.283 3.717 14 O -0.500 6.500 15 C -0.037 4.037 16 C -0.170 4.170 17 C -0.026 4.026 18 N -0.200 5.200 19 C -0.015 4.015 20 N -0.189 5.189 21 H 0.291 0.709 22 C 0.004 3.996 23 N -0.264 5.264 24 C -0.119 4.119 25 H 0.162 0.838 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.190 0.810 29 H 0.234 0.766 30 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 5.609 10.578 4.500 12.791 hybrid contribution 0.147 0.237 -0.867 0.911 sum 5.756 10.815 3.633 12.778 Atomic orbital electron populations 1.80815 1.14810 1.09948 1.14432 1.29760 0.95919 0.91116 0.88220 1.18916 0.80020 0.85537 1.05118 1.43733 1.54939 1.11296 1.05116 1.20550 1.33263 1.10213 0.84347 0.85060 1.26218 0.94668 0.97224 1.02241 1.69911 1.25982 1.32045 1.25884 0.84946 0.79607 0.77935 0.75764 1.16892 1.21800 1.19864 1.18320 0.83024 0.87217 0.83148 1.90648 1.57784 1.61217 1.40356 1.19642 0.95582 0.92999 0.95454 1.22495 0.96247 0.98286 0.99942 1.23205 0.98065 0.88637 0.92671 1.66359 1.04438 1.39258 1.09935 1.19127 0.93826 0.90395 0.98187 1.42767 1.21114 1.14805 1.40239 0.70944 1.26542 0.94519 0.81423 0.97141 1.70138 1.15495 1.26714 1.14007 1.19558 0.96397 0.94136 1.01797 0.83800 0.87892 0.91514 0.81027 0.76632 0.70827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.41 18.54 20.00 0.37 -28.04 16 2 C 0.27 13.78 13.67 89.44 1.22 15.00 16 3 C 0.23 10.54 5.12 84.57 0.43 10.97 16 4 N -0.43 -20.77 2.59 -649.00 -1.68 -22.44 16 5 C -0.36 -16.26 8.83 84.13 0.74 -15.52 16 6 H 0.13 5.40 4.37 -2.91 -0.01 5.38 16 7 C 0.00 -0.07 5.09 84.98 0.43 0.37 16 8 N -0.90 -44.12 8.92 21.69 0.19 -43.92 16 9 Si 0.99 35.72 29.57 68.60 2.03 37.75 16 10 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 11 H -0.29 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 13 C 0.49 24.43 7.17 86.71 0.62 25.06 16 14 O -0.61 -33.91 16.71 -4.09 -0.07 -33.97 16 15 C -0.02 -1.03 5.14 -19.75 -0.10 -1.13 16 16 C -0.15 -4.82 7.64 22.64 0.17 -4.65 16 17 C 0.14 3.72 11.14 84.71 0.94 4.66 16 18 N -0.49 -14.69 10.35 -192.88 -2.00 -16.69 16 19 C 0.22 7.34 8.46 133.91 1.13 8.47 16 20 N -0.57 -13.26 6.23 -195.72 -1.22 -14.48 16 21 H 0.45 6.11 8.96 -92.70 -0.83 5.28 16 22 C 0.29 7.34 12.97 180.02 2.34 9.68 16 23 N -0.54 -22.01 11.23 -191.47 -2.15 -24.16 16 24 C 0.00 0.12 7.00 40.03 0.28 0.40 16 25 H 0.14 6.31 6.18 -2.39 -0.01 6.29 16 26 H 0.10 4.33 7.50 -2.39 -0.02 4.32 16 27 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 28 H 0.17 4.92 7.02 -2.91 -0.02 4.89 16 29 H 0.22 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.28 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -78.16 276.15 4.10 -74.06 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.41 Total: 18.59 kcal Atomic # 6 Polarization: 45.10 SS G_CDS: 8.22 Total: 53.31 kcal Atomic # 7 Polarization: -143.26 SS G_CDS: -6.48 Total: -149.74 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.07 Total: -33.97 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -78.16 4.10 -74.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456585.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.617 kcal (2) G-P(sol) polarization free energy of solvation -78.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds