Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48499 * 109.46854 * 269.99780 * 3 2 1 5 5 H 1.48493 * 109.47076 * 29.99817 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99571 * 3 2 1 7 7 C 1.37876 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00391 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99937 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47129 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99961 * 359.97438 * 11 10 9 13 13 O 1.34282 * 120.00210 * 180.02562 * 11 10 9 14 14 C 1.35865 * 117.00111 * 175.09238 * 13 11 10 15 15 C 1.39873 * 119.55744 * 77.06996 * 14 13 11 16 16 C 1.36042 * 121.02772 * 180.02562 * 15 14 13 17 17 C 1.40445 * 119.59014 * 359.97438 * 16 15 14 18 18 C 1.40360 * 122.01490 * 180.02562 * 17 16 15 19 19 N 1.31276 * 119.90909 * 179.97438 * 18 17 16 20 20 C 1.32621 * 122.78137 * 0.02562 * 19 18 17 21 21 C 1.36157 * 121.86712 * 359.97438 * 20 19 18 22 22 C 1.40746 * 118.66491 * 0.02562 * 21 20 19 23 23 C 1.36733 * 119.54956 * 256.80345 * 14 13 11 24 24 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47380 * 60.00659 * 9 7 2 26 26 H 1.09000 * 109.47455 * 300.00253 * 9 7 2 27 27 H 1.09000 * 109.47167 * 299.99769 * 10 9 7 28 28 H 1.08996 * 109.47537 * 60.00104 * 10 9 7 29 29 H 1.08004 * 119.48857 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.20314 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.04652 * 359.96695 * 18 17 16 32 32 H 1.08007 * 119.06920 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.66436 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.27105 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1327 -1.5901 0.0026 13 8 6.2000 -3.7994 0.0018 14 6 7.5530 -3.7304 -0.1006 15 6 8.3124 -3.3739 1.0186 16 6 9.6688 -3.2951 0.9496 17 6 10.3190 -3.5761 -0.2632 18 6 11.7152 -3.5111 -0.3915 19 7 12.2799 -3.7827 -1.5450 20 6 11.5851 -4.1232 -2.6221 21 6 10.2268 -4.2148 -2.6021 22 6 9.5491 -3.9380 -1.3999 23 6 8.1543 -4.0157 -1.2950 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8753 -0.6803 -0.8888 27 1 3.6579 -3.1505 0.8907 28 1 3.6586 -3.1501 -0.8892 29 1 7.8142 -3.1578 1.9522 30 1 10.2421 -3.0190 1.8222 31 1 12.3241 -3.2377 0.4576 32 1 12.1117 -4.3338 -3.5413 33 1 9.6803 -4.4935 -3.4909 34 1 7.5585 -4.2945 -2.1516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584637017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = -30.291249 kcal Electronic energy + Delta-G solvation = -19132.241967 eV Core-core repulsion = 15995.244533 eV Total energy + Delta-G solvation = -3136.997433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51020 -40.49616 -37.75622 -36.28348 -33.73765 -33.30260 -31.62253 -30.77557 -29.88231 -26.82384 -24.50322 -24.04786 -22.66008 -22.02325 -20.17561 -18.62151 -17.87230 -17.42135 -17.34444 -16.44479 -16.01438 -15.64664 -15.17120 -14.48374 -14.25362 -14.17764 -14.04577 -13.67712 -13.18052 -13.03300 -12.73804 -12.68005 -12.14130 -11.75237 -11.58994 -11.10876 -10.88021 -10.55029 -10.45516 -10.30758 -10.15704 -9.85430 -9.78121 -9.34438 -9.12312 -8.62327 -8.36396 -6.13619 -4.14365 0.03376 0.52755 1.60539 2.39162 2.48227 3.13544 3.29411 3.36872 3.44839 3.80855 4.11368 4.24987 4.40104 4.47683 4.52811 4.65960 4.75340 4.95783 5.07830 5.20887 5.27608 5.38182 5.48289 5.68489 5.76749 5.84600 5.87230 5.97470 6.04228 6.22901 6.35796 6.47905 6.69942 7.12958 7.19855 7.62222 7.67878 8.03049 8.38913 8.88067 9.47637 10.98796 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.003456 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.538977 B = 8100.606534 C = 8197.047526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.092 4.092 11 C 0.457 3.543 12 O -0.490 6.490 13 O -0.305 6.305 14 C 0.122 3.878 15 C -0.121 4.121 16 C -0.072 4.072 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.492 5.492 20 C 0.076 3.924 21 C -0.152 4.152 22 C -0.011 4.011 23 C -0.121 4.121 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.203 -9.887 -1.120 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.095 0.905 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.302 3.698 12 O -0.373 6.373 13 O -0.222 6.222 14 C 0.079 3.921 15 C -0.139 4.139 16 C -0.091 4.091 17 C -0.120 4.120 18 C -0.022 4.022 19 N -0.200 5.200 20 C -0.067 4.067 21 C -0.171 4.171 22 C -0.016 4.016 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 22.137 -9.420 -1.340 24.095 hybrid contribution -0.619 0.875 0.042 1.073 sum 21.518 -8.545 -1.298 23.189 Atomic orbital electron populations 1.69894 1.06273 1.27174 1.50310 1.24945 0.94724 0.99193 0.94136 0.86816 0.80561 0.83452 0.78844 1.20117 1.21210 1.18633 1.20989 0.88639 0.94878 1.52201 0.90546 1.19513 0.97113 0.89289 0.98061 1.21628 0.82091 1.03929 1.05302 1.25306 0.92645 0.80404 0.71481 1.90670 1.70291 1.32316 1.44063 1.84719 1.16683 1.36678 1.84112 1.18413 0.82151 0.98196 0.93321 1.21151 0.94510 0.99490 0.98782 1.20849 0.93903 0.97681 0.96703 1.19082 0.95433 1.02904 0.94551 1.23192 0.90598 0.92981 0.95400 1.67447 1.41466 1.11515 0.99554 1.22182 0.91355 0.96472 0.96712 1.21916 0.95938 1.01574 0.97721 1.17935 0.92901 0.97177 0.93604 1.20958 0.93569 1.02382 0.97038 0.92499 0.95483 0.95979 0.87834 0.87866 0.84726 0.84090 0.81823 0.82882 0.84216 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.53 -14.52 9.66 -34.44 -0.33 -14.86 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.70 5.75 -27.88 -0.16 -1.86 16 11 C 0.46 8.16 7.83 36.01 0.28 8.44 16 12 O -0.49 -10.13 15.47 -18.75 -0.29 -10.42 16 13 O -0.31 -4.73 9.99 -23.48 -0.23 -4.96 16 14 C 0.12 1.73 5.08 -39.51 -0.20 1.53 16 15 C -0.12 -1.51 9.45 -39.76 -0.38 -1.89 16 16 C -0.07 -0.74 9.80 -39.54 -0.39 -1.12 16 17 C -0.12 -1.31 5.74 -106.83 -0.61 -1.92 16 18 C 0.15 1.47 11.05 -16.99 -0.19 1.28 16 19 N -0.49 -5.40 10.30 -13.16 -0.14 -5.54 16 20 C 0.08 0.73 11.07 -17.96 -0.20 0.53 16 21 C -0.15 -1.49 9.88 -39.38 -0.39 -1.88 16 22 C -0.01 -0.13 5.75 -106.82 -0.61 -0.74 16 23 C -0.12 -1.53 9.72 -39.43 -0.38 -1.92 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -33.03 303.13 -7.47 -40.50 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.73 Total: -2.33 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.75 Total: -12.58 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.64 Total: -31.85 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.52 Total: -15.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.03 -7.47 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584637017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.205 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds