Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48499 * 109.46854 * 269.99780 * 3 2 1 5 5 H 1.48493 * 109.47076 * 29.99817 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99571 * 3 2 1 7 7 C 1.37876 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00391 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99937 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47129 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99961 * 359.97438 * 11 10 9 13 13 O 1.34282 * 120.00210 * 180.02562 * 11 10 9 14 14 C 1.35865 * 117.00111 * 175.09238 * 13 11 10 15 15 C 1.39873 * 119.55744 * 77.06996 * 14 13 11 16 16 C 1.36042 * 121.02772 * 180.02562 * 15 14 13 17 17 C 1.40445 * 119.59014 * 359.97438 * 16 15 14 18 18 C 1.40360 * 122.01490 * 180.02562 * 17 16 15 19 19 N 1.31276 * 119.90909 * 179.97438 * 18 17 16 20 20 C 1.32621 * 122.78137 * 0.02562 * 19 18 17 21 21 C 1.36157 * 121.86712 * 359.97438 * 20 19 18 22 22 C 1.40746 * 118.66491 * 0.02562 * 21 20 19 23 23 C 1.36733 * 119.54956 * 256.80345 * 14 13 11 24 24 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47380 * 60.00659 * 9 7 2 26 26 H 1.09000 * 109.47455 * 300.00253 * 9 7 2 27 27 H 1.09000 * 109.47167 * 299.99769 * 10 9 7 28 28 H 1.08996 * 109.47537 * 60.00104 * 10 9 7 29 29 H 1.08004 * 119.48857 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.20314 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.04652 * 359.96695 * 18 17 16 32 32 H 1.08007 * 119.06920 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.66436 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.27105 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0022 12 8 6.1327 -1.5901 0.0026 13 8 6.2000 -3.7994 0.0018 14 6 7.5530 -3.7304 -0.1006 15 6 8.3124 -3.3739 1.0186 16 6 9.6688 -3.2951 0.9496 17 6 10.3190 -3.5761 -0.2632 18 6 11.7152 -3.5111 -0.3915 19 7 12.2799 -3.7827 -1.5450 20 6 11.5851 -4.1232 -2.6221 21 6 10.2268 -4.2148 -2.6021 22 6 9.5491 -3.9380 -1.3999 23 6 8.1543 -4.0157 -1.2950 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8753 -0.6803 -0.8888 27 1 3.6579 -3.1505 0.8907 28 1 3.6586 -3.1501 -0.8892 29 1 7.8142 -3.1578 1.9522 30 1 10.2421 -3.0190 1.8222 31 1 12.3241 -3.2377 0.4576 32 1 12.1117 -4.3338 -3.5413 33 1 9.6803 -4.4935 -3.4909 34 1 7.5585 -4.2945 -2.1516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584637017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = -49.124814 kcal Electronic energy + Delta-G solvation = -19133.058651 eV Core-core repulsion = 15995.244533 eV Total energy + Delta-G solvation = -3137.814118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60422 -41.47549 -38.92318 -37.34122 -35.67714 -34.10164 -33.51225 -31.73542 -30.72143 -28.58092 -25.57029 -25.00048 -23.63623 -23.32453 -21.74601 -19.82834 -19.20611 -18.74638 -18.27396 -17.84974 -17.19298 -16.81055 -16.29920 -15.95237 -15.38957 -15.26511 -15.14937 -14.72245 -14.61076 -14.49528 -13.96031 -13.69296 -13.52552 -13.02392 -12.97746 -12.74908 -12.29151 -12.06628 -11.88715 -11.84835 -11.66877 -11.45086 -11.30669 -10.80456 -10.57299 -10.06129 -9.17704 -8.33175 -6.37624 -0.79237 -0.35024 0.78211 1.00191 1.33343 1.35942 1.45415 1.48695 2.10503 2.32965 2.99166 3.02397 3.43740 3.49299 3.55251 3.73355 3.74864 3.92425 4.04916 4.18739 4.30092 4.34457 4.52297 4.55184 4.66961 4.81075 4.91183 4.97591 5.06665 5.15051 5.22268 5.29578 5.32605 5.54308 5.59628 5.69238 6.19447 6.66260 6.74214 6.93232 7.27710 8.82290 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.003456 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.538977 B = 8100.606534 C = 8197.047526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.001 3.999 10 C -0.087 4.087 11 C 0.469 3.531 12 O -0.521 6.521 13 O -0.297 6.297 14 C 0.087 3.913 15 C -0.145 4.145 16 C -0.056 4.056 17 C -0.131 4.131 18 C 0.152 3.848 19 N -0.511 5.511 20 C 0.073 3.927 21 C -0.157 4.157 22 C -0.030 4.030 23 C -0.125 4.125 24 H 0.268 0.732 25 H 0.019 0.981 26 H 0.016 0.984 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.178 0.822 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.802 -9.969 -1.249 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.569 4.569 8 H 0.072 0.928 9 C -0.036 4.036 10 C -0.125 4.125 11 C 0.315 3.685 12 O -0.408 6.408 13 O -0.213 6.213 14 C 0.045 3.955 15 C -0.163 4.163 16 C -0.075 4.075 17 C -0.133 4.133 18 C -0.018 4.018 19 N -0.219 5.219 20 C -0.070 4.070 21 C -0.176 4.176 22 C -0.035 4.035 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.195 0.805 31 H 0.214 0.786 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 24.748 -9.535 -1.472 26.562 hybrid contribution -1.311 0.777 0.039 1.524 sum 23.437 -8.758 -1.433 25.061 Atomic orbital electron populations 1.70013 1.07858 1.28231 1.52068 1.25783 0.95474 1.02850 0.94141 0.85847 0.79356 0.79456 0.79187 1.19370 1.20455 1.18169 1.21314 0.90776 0.93968 1.50870 0.92830 1.19345 0.94478 0.92539 0.97249 1.21411 0.83023 1.00989 1.07034 1.24915 0.92323 0.80591 0.70686 1.90652 1.70891 1.33539 1.45720 1.84668 1.17953 1.35081 1.83591 1.18763 0.81256 1.00664 0.94809 1.21283 0.95540 1.00947 0.98532 1.21231 0.93204 0.95469 0.97639 1.19381 0.96257 1.02965 0.94684 1.23714 0.90288 0.91767 0.96081 1.67531 1.42040 1.12071 1.00242 1.22658 0.91510 0.95403 0.97398 1.22173 0.96228 1.01340 0.97862 1.18224 0.92715 0.97657 0.94913 1.21129 0.94323 1.01992 0.96874 0.92261 0.96250 0.96561 0.86182 0.86209 0.84474 0.80471 0.78595 0.80314 0.82083 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 2 C 0.02 0.90 5.47 84.66 0.46 1.37 16 3 Si 0.94 44.85 27.47 68.60 1.88 46.73 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 7 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.00 0.07 3.33 29.85 0.10 0.17 16 10 C -0.09 -3.15 5.75 29.85 0.17 -2.98 16 11 C 0.47 16.46 7.83 71.24 0.56 17.02 16 12 O -0.52 -21.39 15.47 21.97 0.34 -21.05 16 13 O -0.30 -9.05 9.99 5.03 0.05 -9.00 16 14 C 0.09 2.43 5.08 22.31 0.11 2.55 16 15 C -0.14 -3.48 9.45 22.15 0.21 -3.27 16 16 C -0.06 -1.03 9.80 22.30 0.22 -0.81 16 17 C -0.13 -2.63 5.74 -21.30 -0.12 -2.75 16 18 C 0.15 2.56 11.05 85.29 0.94 3.50 16 19 N -0.51 -9.92 10.30 -195.56 -2.01 -11.93 16 20 C 0.07 1.23 11.07 84.09 0.93 2.16 16 21 C -0.16 -2.76 9.88 22.40 0.22 -2.54 16 22 C -0.03 -0.66 5.75 -21.29 -0.12 -0.78 16 23 C -0.13 -3.07 9.72 22.37 0.22 -2.85 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.02 0.92 7.16 -2.39 -0.02 0.91 16 26 H 0.02 0.77 7.53 -2.39 -0.02 0.75 16 27 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.26 303.13 5.76 -65.50 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.06 Total: 5.44 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 4.15 Total: -18.40 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.71 Total: -69.22 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: 0.39 Total: -30.05 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -71.26 5.76 -65.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584637017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.372 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds