Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.97588 * 124.70664 * 10 9 7 12 12 C 1.35235 * 107.86170 * 179.87711 * 11 10 9 13 13 C 1.40411 * 107.86964 * 0.39456 * 12 11 10 14 14 N 1.40151 * 125.97680 * 179.75652 * 13 12 11 15 15 C 1.34775 * 120.00374 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00471 * 179.97438 * 15 14 13 18 18 H 1.08998 * 115.54696 * 34.42232 * 17 15 14 19 19 C 1.52997 * 117.50074 * 180.08587 * 17 15 14 20 20 C 1.52999 * 117.50177 * 248.74669 * 17 15 14 21 21 F 1.39901 * 117.49817 * 0.02562 * 20 17 15 22 22 F 1.39902 * 117.49842 * 145.01919 * 20 17 15 23 23 N 1.31221 * 108.04869 * 359.75577 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 26 26 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 27 27 H 1.07998 * 126.07045 * 0.03737 * 11 10 9 28 28 H 1.08004 * 126.07001 * 180.13461 * 12 11 10 29 29 H 0.97010 * 120.00210 * 180.02562 * 14 13 12 30 30 H 1.09001 * 117.50113 * 214.97966 * 19 17 15 31 31 H 1.09005 * 117.49903 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2456 -4.6194 0.8974 12 6 3.2611 -5.4423 0.5501 13 6 3.8695 -4.9142 -0.5999 14 7 4.9656 -5.4647 -1.2779 15 6 5.5301 -6.6048 -0.8329 16 8 5.0891 -7.1547 0.1542 17 6 6.7084 -7.1969 -1.5623 18 1 7.3959 -6.4775 -2.0069 19 6 7.3031 -8.4933 -1.0087 20 6 6.4891 -8.5166 -2.3048 21 9 5.2099 -9.0809 -2.2551 22 9 7.1868 -8.7077 -3.5023 23 7 3.2323 -3.8153 -0.9288 24 1 -0.4850 -0.8401 0.0004 25 1 0.6247 -2.5570 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 1.5843 -4.7468 1.7416 28 1 3.5549 -6.3433 1.0681 29 1 5.3181 -5.0251 -2.0676 30 1 8.3819 -8.6270 -1.0895 31 1 6.8424 -8.9177 -0.1166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586593022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = -41.127659 kcal Electronic energy + Delta-G solvation = -19807.630798 eV Core-core repulsion = 16148.226684 eV Total energy + Delta-G solvation = -3659.404114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.81543 -48.50241 -42.37145 -40.87626 -36.96156 -36.32393 -35.58950 -32.75676 -31.08636 -28.47469 -26.40818 -24.82548 -23.60708 -22.78324 -21.88670 -21.06938 -19.34395 -19.23807 -18.56464 -18.05544 -17.48230 -17.11700 -16.74920 -16.44409 -15.75809 -15.53228 -15.37772 -15.14458 -15.04185 -14.72556 -14.62664 -14.20186 -13.97146 -13.75654 -13.32575 -13.21576 -12.62179 -12.38708 -12.09353 -11.99003 -11.75024 -11.34671 -11.05015 -11.00489 -10.70050 -9.90110 -9.27651 -8.79719 -6.57650 0.61570 1.12919 1.17805 1.50688 1.58381 1.77152 1.84753 1.95869 2.13650 2.34376 2.47600 3.00024 3.06003 3.19405 3.46214 3.69251 3.86334 4.10219 4.40801 4.52942 4.62130 4.66859 4.75267 4.77741 4.81584 5.02259 5.52736 5.75452 5.89485 6.07954 6.24179 6.39326 6.79538 6.94170 7.18297 8.57087 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.036352 B = 0.003573 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.054073 B = 7835.630807 C = 8156.663104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.126 2.874 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.046 0.954 9 C 0.258 3.742 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.290 4.290 13 C 0.264 3.736 14 N -0.618 5.618 15 C 0.547 3.453 16 O -0.532 6.532 17 C -0.185 4.185 18 H 0.193 0.807 19 C -0.109 4.109 20 C 0.204 3.796 21 F -0.173 7.173 22 F -0.154 7.154 23 N -0.343 5.343 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.017 0.983 27 H 0.203 0.797 28 H 0.172 0.828 29 H 0.427 0.573 30 H 0.176 0.824 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.921 -15.881 -2.263 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.947 3.053 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.321 4.321 13 C 0.009 3.991 14 N -0.267 5.267 15 C 0.333 3.667 16 O -0.407 6.407 17 C -0.207 4.207 18 H 0.210 0.790 19 C -0.146 4.146 20 C 0.167 3.833 21 F -0.154 7.154 22 F -0.134 7.134 23 N -0.174 5.174 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.220 0.780 28 H 0.189 0.811 29 H 0.265 0.735 30 H 0.194 0.806 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.232 -13.634 -2.428 20.586 hybrid contribution -0.337 -2.051 -0.197 2.087 sum 14.895 -15.685 -2.624 21.789 Atomic orbital electron populations 1.70889 1.07473 1.30257 1.47383 1.27288 0.96423 1.06109 0.92003 0.82797 0.73662 0.70816 0.78058 1.20628 1.19569 1.19986 1.22328 0.94699 0.92066 1.56884 0.93609 1.19454 0.86418 0.82803 0.97443 1.48595 1.23816 1.20247 1.19704 1.23210 1.00597 0.88750 0.96615 1.21746 1.02134 1.06554 1.01684 1.19445 0.91727 0.93247 0.94645 1.42468 1.28464 1.25226 1.30521 1.19945 0.83475 0.79049 0.84203 1.90651 1.62782 1.60528 1.26719 1.23743 0.99220 0.94753 1.02992 0.79032 1.24566 1.03723 0.92433 0.93928 1.20010 0.80091 0.98878 0.84312 1.93054 1.39647 1.86162 1.96517 1.93067 1.77225 1.95594 1.47546 1.77272 1.04550 1.18115 1.17437 0.92897 0.92701 0.96547 0.77989 0.81112 0.73459 0.80619 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.65 21.45 0.29 -53.47 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 3 Si 1.13 49.48 29.90 68.60 2.05 51.53 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.62 -35.25 9.24 25.60 0.24 -35.01 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.24 5.57 85.63 0.48 13.72 16 10 N -0.34 -16.02 3.67 -351.85 -1.29 -17.31 16 11 C 0.06 2.20 11.43 83.52 0.95 3.15 16 12 C -0.29 -11.13 9.61 22.11 0.21 -10.91 16 13 C 0.26 10.37 8.11 133.33 1.08 11.45 16 14 N -0.62 -17.80 5.45 -307.51 -1.68 -19.47 16 15 C 0.55 13.81 7.22 87.66 0.63 14.44 16 16 O -0.53 -16.71 13.39 -3.08 -0.04 -16.75 16 17 C -0.19 -2.65 6.17 -11.54 -0.07 -2.72 16 18 H 0.19 1.25 8.14 -2.39 -0.02 1.23 16 19 C -0.11 -1.13 10.02 30.62 0.31 -0.82 16 20 C 0.20 3.42 5.20 30.62 0.16 3.58 16 21 F -0.17 -4.23 17.13 44.97 0.77 -3.46 16 22 F -0.15 -2.56 17.60 44.97 0.79 -1.76 16 23 N -0.34 -15.93 12.42 -54.45 -0.68 -16.61 16 24 H 0.26 15.05 7.22 -92.71 -0.67 14.38 16 25 H 0.06 2.69 7.93 -2.38 -0.02 2.67 16 26 H 0.02 0.90 8.01 -2.39 -0.02 0.88 16 27 H 0.20 6.15 8.06 -2.91 -0.02 6.12 16 28 H 0.17 6.21 5.92 -2.91 -0.02 6.19 16 29 H 0.43 9.68 8.82 -92.70 -0.82 8.87 16 30 H 0.18 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.13 1.65 7.67 -2.38 -0.02 1.63 16 Total: -1.00 -73.72 290.28 5.15 -68.57 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.47 Total: 12.43 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.45 Total: -3.70 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.35 Total: -106.86 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.04 Total: -16.75 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.56 Total: -5.23 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -73.72 5.15 -68.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586593022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.443 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds