Wall clock time and date at job start Mon Mar 30 2020 00:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47334 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46814 * 120.00239 * 3 2 1 7 7 C 1.38945 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00037 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00023 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34222 * 117.00137 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00432 * 179.71953 * 14 13 12 17 17 C 1.50708 * 112.84704 * 50.60950 * 16 14 13 18 18 O 1.20821 * 120.00089 * 129.66292 * 17 16 14 19 19 O 1.34227 * 120.00187 * 309.67115 * 17 16 14 20 20 C 1.53783 * 113.61912 * 279.41790 * 16 14 13 21 21 C 1.53950 * 87.01778 * 220.04582 * 20 16 14 22 22 C 1.53775 * 87.11562 * 25.35842 * 21 20 16 23 23 H 0.96998 * 120.00121 * 359.97438 * 1 2 3 24 24 H 0.97003 * 120.00225 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.46698 * 60.00246 * 12 10 9 26 26 H 1.08997 * 109.46779 * 300.00365 * 12 10 9 27 27 H 0.96696 * 117.00146 * 179.97438 * 19 17 16 28 28 H 1.09007 * 113.60883 * 334.56349 * 20 16 14 29 29 H 1.08999 * 113.61552 * 105.46132 * 20 16 14 30 30 H 1.08998 * 113.53495 * 270.80627 * 21 20 16 31 31 H 1.08996 * 113.74259 * 139.94449 * 21 20 16 32 32 H 1.09001 * 113.61506 * 220.09071 * 22 21 20 33 33 H 1.09003 * 113.68938 * 89.19737 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 0.0005 14 6 1.6743 -7.2069 0.0006 15 8 0.4764 -7.3652 -0.0003 16 6 2.5923 -8.4020 -0.0053 17 6 3.6522 -8.3311 1.0637 18 8 3.8290 -9.2707 1.8024 19 8 4.3996 -7.2240 1.1954 20 6 3.1446 -8.7478 -1.3983 21 6 2.9389 -10.2270 -1.0242 22 6 1.8505 -9.7484 -0.0489 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3907 -0.0005 25 1 0.6168 -4.9208 -0.8897 26 1 0.6174 -4.9204 0.8902 27 1 5.0665 -7.2252 1.8956 28 1 2.5075 -8.4116 -2.2164 29 1 4.1904 -8.4721 -1.5341 30 1 3.8012 -10.6751 -0.5305 31 1 2.5549 -10.8371 -1.8418 32 1 1.8532 -10.2794 0.9030 33 1 0.8584 -9.6860 -0.4961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:51 Heat of formation + Delta-G solvation = -185.915380 kcal Electronic energy + Delta-G solvation = -20779.705467 eV Core-core repulsion = 17192.817651 eV Total energy + Delta-G solvation = -3586.887816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.59173 -39.95172 -38.42084 -37.77130 -36.12342 -36.06615 -33.99691 -31.38486 -29.29896 -27.63788 -26.12241 -24.63317 -23.26992 -21.73126 -19.59462 -19.53540 -18.47884 -18.08566 -17.80734 -16.69119 -16.66588 -16.00197 -15.76936 -15.33650 -14.80106 -14.59951 -14.08744 -14.02417 -13.54736 -12.94893 -12.84545 -12.65447 -12.24652 -12.09194 -11.67951 -11.65271 -11.61821 -11.33393 -11.11712 -10.87617 -10.72119 -10.49339 -10.45627 -10.36488 -10.27046 -9.59319 -8.51176 -8.08137 -6.49988 -3.92084 1.70500 2.09691 2.63319 2.81701 3.15248 3.22579 3.27092 3.73804 3.80884 4.02781 4.09795 4.34739 4.50479 4.81315 5.01770 5.14265 5.16529 5.32201 5.36736 5.48342 5.55607 5.56806 5.66382 5.67548 5.96325 6.03962 6.32567 6.50081 7.47450 7.66372 7.76636 7.94266 8.48666 9.07034 9.39255 9.89422 10.67247 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.038088 B = 0.003914 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.970187 B = 7151.631417 C = 7513.915870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.571 6.571 12 C 0.057 3.943 13 O -0.306 6.306 14 C 0.476 3.524 15 O -0.500 6.500 16 C -0.085 4.085 17 C 0.510 3.490 18 O -0.506 6.506 19 O -0.482 6.482 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.100 4.100 23 H 0.274 0.726 24 H 0.394 0.606 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.414 0.586 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -16.592 -1.501 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.454 6.454 12 C -0.021 4.021 13 O -0.219 6.219 14 C 0.317 3.683 15 O -0.388 6.388 16 C -0.087 4.087 17 C 0.351 3.649 18 O -0.395 6.395 19 O -0.292 6.292 20 C -0.144 4.144 21 C -0.179 4.179 22 C -0.138 4.138 23 H 0.084 0.916 24 H 0.228 0.772 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.273 0.727 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.206 -16.661 -1.606 17.043 hybrid contribution -0.038 1.046 0.563 1.188 sum 3.169 -15.616 -1.042 15.968 Atomic orbital electron populations 1.69605 1.06000 1.28578 1.49671 1.25302 0.95676 0.99841 0.96898 0.85860 0.78750 0.80097 0.79189 1.19750 1.20883 1.19769 1.19675 0.93448 0.81759 1.48286 0.87660 1.41697 1.09341 1.04061 1.64008 1.19274 0.88368 0.83972 0.86030 1.90574 1.13263 1.86680 1.54916 1.22836 0.90934 0.84762 1.03518 1.86648 1.39726 1.13530 1.82005 1.22740 0.87789 0.84611 0.73166 1.90672 1.15989 1.86690 1.45469 1.21725 0.94627 0.94234 0.98136 1.21953 0.80437 0.80005 0.82494 1.90715 1.67591 1.38089 1.43101 1.84719 1.48252 1.39609 1.56614 1.22981 1.03218 0.96318 0.91858 1.22975 0.99468 0.95790 0.99648 1.22966 0.99111 0.89481 1.02206 0.91585 0.77196 0.89431 0.89545 0.72670 0.87612 0.89022 0.89174 0.89602 0.88832 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.90 5.29 -10.96 -0.06 -13.96 16 10 C 0.44 10.50 7.86 -10.98 -0.09 10.42 16 11 O -0.57 -15.69 16.08 -14.11 -0.23 -15.91 16 12 C 0.06 1.08 5.94 36.01 0.21 1.30 16 13 O -0.31 -5.69 8.88 -47.95 -0.43 -6.12 16 14 C 0.48 7.57 7.00 36.00 0.25 7.82 16 15 O -0.50 -8.51 15.66 -18.76 -0.29 -8.80 16 16 C -0.08 -1.07 1.27 -156.00 -0.20 -1.27 16 17 C 0.51 6.76 7.10 36.01 0.26 7.02 16 18 O -0.51 -7.24 16.59 -18.75 -0.31 -7.55 16 19 O -0.48 -6.25 12.55 -43.69 -0.55 -6.80 16 20 C -0.11 -1.03 7.22 -25.83 -0.19 -1.21 16 21 C -0.14 -1.15 7.76 -25.83 -0.20 -1.35 16 22 C -0.10 -1.03 6.78 -25.92 -0.18 -1.20 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 25 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 26 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 27 H 0.41 3.36 9.10 45.56 0.41 3.78 16 28 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 33 H 0.11 1.10 7.45 -51.93 -0.39 0.71 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -33.85 301.15 -4.71 -38.56 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -2.72 Total: 10.08 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -0.37 Total: 13.65 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.67 Total: -37.21 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.81 Total: -45.17 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.85 -4.71 -38.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.356 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds