Wall clock time and date at job start Mon Mar 30 2020 00:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38353 * 127.15679 * 2 1 4 4 C 1.39779 * 126.56237 * 0.02562 * 3 2 1 5 5 H 1.08004 * 119.99586 * 0.30945 * 4 3 2 6 6 C 1.40077 * 119.99638 * 180.30984 * 4 3 2 7 7 N 1.30814 * 120.00292 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99792 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47430 * 119.99913 * 8 6 4 11 11 H 1.48496 * 109.47171 * 240.00102 * 8 6 4 12 12 N 1.33095 * 106.87117 * 180.28859 * 3 2 1 13 13 N 1.28520 * 109.74493 * 359.74227 * 12 3 2 14 14 C 1.32388 * 110.20407 * 359.97438 * 13 12 3 15 15 S 1.76198 * 126.25764 * 180.02562 * 14 13 12 16 16 C 1.81002 * 99.99878 * 0.02666 * 15 14 13 17 17 C 1.53006 * 109.47089 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00253 * 0.02562 * 19 18 17 21 21 O 1.34237 * 119.99997 * 179.97438 * 19 18 17 22 22 H 1.08993 * 109.47110 * 270.16706 * 1 2 3 23 23 H 1.08999 * 109.46375 * 30.16653 * 1 2 3 24 24 H 1.08996 * 109.47013 * 150.15935 * 1 2 3 25 25 H 0.97001 * 120.00052 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47446 * 60.00463 * 16 15 14 27 27 H 1.09001 * 109.47383 * 300.00236 * 16 15 14 28 28 H 1.09001 * 109.47002 * 299.99666 * 17 16 15 29 29 H 1.08993 * 109.46955 * 60.00103 * 17 16 15 30 30 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 31 31 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 32 32 H 0.96695 * 116.99741 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0060 6 6 2.8770 3.4567 -0.0061 7 7 4.1478 3.1464 -0.0133 8 14 2.3533 5.2498 -0.0062 9 1 0.8706 5.3325 0.0008 10 1 2.8928 5.9232 1.2024 11 1 2.8802 5.9193 -1.2225 12 7 3.5491 0.6412 -0.0064 13 7 3.5370 -0.6439 -0.0048 14 6 2.2903 -1.0894 0.0032 15 16 1.7872 -2.7780 0.0088 16 6 3.4057 -3.5882 0.0015 17 6 3.2160 -5.1065 0.0045 18 6 4.5841 -5.7914 -0.0011 19 6 4.3973 -7.2867 0.0025 20 8 3.2841 -7.7565 0.0084 21 8 5.4676 -8.0969 -0.0019 22 1 -0.3633 0.0030 1.0276 23 1 -0.3632 0.8885 -0.5164 24 1 -0.3633 -0.8914 -0.5113 25 1 4.8182 3.8475 -0.0175 26 1 3.9654 -3.2900 0.8879 27 1 3.9558 -3.2929 -0.8920 28 1 2.6658 -5.4021 0.8978 29 1 2.6565 -5.4045 -0.8822 30 1 5.1348 -5.4958 -0.8942 31 1 5.1433 -5.4933 0.8858 32 1 5.2976 -9.0488 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600912941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:12 Heat of formation + Delta-G solvation = -39.049989 kcal Electronic energy + Delta-G solvation = -17581.933237 eV Core-core repulsion = 14476.459604 eV Total energy + Delta-G solvation = -3105.473633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50935 -40.42785 -36.47606 -34.68470 -33.70053 -33.30266 -29.38164 -28.57550 -26.50292 -25.55903 -23.13962 -21.05827 -20.75272 -20.24318 -18.27667 -17.36573 -16.88727 -16.50277 -15.93569 -15.42171 -14.98495 -14.60008 -14.59047 -13.96482 -13.34200 -13.32333 -12.71785 -12.28983 -12.27828 -11.96397 -11.85651 -11.73863 -11.33523 -11.30355 -10.97968 -10.94919 -10.78029 -10.36220 -10.18904 -9.72996 -9.63745 -8.70907 -8.43466 -8.39379 -6.84500 -6.66140 -4.58432 1.99140 2.00635 2.79143 2.89796 2.93164 3.05862 3.10407 3.35283 3.86428 4.23176 4.41257 4.65453 4.80238 4.90879 5.31428 5.33748 5.35404 5.43701 5.55572 5.79026 5.88881 5.96746 6.04604 6.20141 6.29416 6.76116 6.88370 7.23166 7.48032 7.67176 7.88130 8.17194 8.69250 8.84981 10.26484 10.62646 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045728 B = 0.003421 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.173503 B = 8183.470145 C = 8764.587710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.516 5.516 3 C 0.346 3.654 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.334 5.334 13 N -0.286 5.286 14 C 0.046 3.954 15 S -0.055 6.055 16 C -0.093 4.093 17 C -0.094 4.094 18 C -0.109 4.109 19 C 0.480 3.520 20 O -0.516 6.516 21 O -0.519 6.519 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.279 0.721 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -13.005 -0.057 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.103 0.897 6 C -0.147 4.147 7 N -0.361 5.361 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.181 5.181 13 N -0.132 5.132 14 C -0.325 4.325 15 S 0.173 5.827 16 C -0.242 4.242 17 C -0.133 4.133 18 C -0.148 4.148 19 C 0.322 3.678 20 O -0.404 6.404 21 O -0.331 6.331 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.087 -13.138 -0.065 13.183 hybrid contribution -0.585 0.901 0.014 1.074 sum -1.672 -12.238 -0.051 12.351 Atomic orbital electron populations 1.21494 0.78503 1.02705 1.01643 1.46043 1.06110 1.05337 1.64291 1.21630 0.84763 0.88438 0.95008 1.18145 0.94731 0.86443 1.49400 0.89745 1.25801 0.94342 1.01316 0.93288 1.70019 1.00712 1.34893 1.30445 0.86066 0.79841 0.80993 0.78638 1.18539 1.19725 1.19737 1.75453 1.15309 0.97852 1.29522 1.74522 1.15172 1.07610 1.15925 1.25324 0.91536 0.92614 1.23067 1.84435 1.10746 0.91859 1.95708 1.23252 0.98024 0.95741 1.07188 1.21171 0.95299 0.92114 1.04765 1.21369 1.00655 0.86098 1.06703 1.23613 0.81855 0.90939 0.71358 1.90736 1.26309 1.77735 1.45661 1.84559 1.39399 1.23459 1.85692 0.92553 0.90367 0.91495 0.91031 0.88864 0.88879 0.90139 0.90137 0.87047 0.87051 0.73303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.87 59.85 0.65 2.52 16 2 N -0.52 -12.53 3.26 -123.18 -0.40 -12.93 16 3 C 0.35 9.70 7.53 -154.81 -1.17 8.53 16 4 C -0.45 -11.85 9.04 -38.32 -0.35 -12.19 16 5 H 0.08 2.03 7.31 -52.48 -0.38 1.65 16 6 C 0.08 1.99 5.50 -17.30 -0.10 1.89 16 7 N -0.74 -20.19 11.94 55.56 0.66 -19.52 16 8 Si 0.92 18.45 29.56 -169.99 -5.03 13.43 16 9 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 10 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 N -0.33 -10.04 10.48 31.26 0.33 -9.71 16 13 N -0.29 -7.81 11.62 30.89 0.36 -7.45 16 14 C 0.05 1.12 8.09 -87.28 -0.71 0.41 16 15 S -0.05 -0.99 21.79 -107.50 -2.34 -3.33 16 16 C -0.09 -1.37 5.22 37.16 0.19 -1.18 16 17 C -0.09 -1.09 4.51 -26.73 -0.12 -1.21 16 18 C -0.11 -0.99 5.81 -27.89 -0.16 -1.15 16 19 C 0.48 4.80 8.33 36.00 0.30 5.10 16 20 O -0.52 -6.84 16.74 -18.75 -0.31 -7.15 16 21 O -0.52 -3.98 13.42 -39.28 -0.53 -4.50 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 24 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 25 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 26 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.41 1.44 9.10 45.56 0.41 1.86 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -35.31 302.02 -7.02 -42.32 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.86 Total: 1.57 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.45 Total: 2.73 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.95 Total: -49.62 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.84 Total: -11.66 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.34 Total: -3.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.31 -7.02 -42.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.272 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds